Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0827 ATGTGTCCTTCCGGCCGCTCCCTCTCTCCTCCCTCCGCCTCCGCCGCCTCCTCCTCTTCTGCTGCTGGTTCCGCCGTCGACTCGTCTTTCCGACCAGCATTCGATGTCCTTGATTGTGACCGCGACGGCAAGATTAGCCGCGACGATCTTCGGACATTCTACGCCGGCAGGGGTTCCGCCGACGTTGATGACGACCTCATTGGGACGATGATGGTGGTGGCGGACACCAACAAGGACGGTTTCGTGGAGTACGATGAGTTCGAGACGGTGGTTCTGGGCGGCGGCGGTGGCAAGAAGAACGGATCTATGAGTTCGACGACGTCGTTTTTGAAGGAGATGTTCAAAGTGATGGACAAGGACGGAGACGGCCAGCTCAGCCACCGGGATATGAAGAGCTTCATGGAAATGGCTGGTCTCGCCATTACCGACGAAGACGTCGATGCAATGATCACTTTGGCCGGTGGCAATCGTAACGGCGGCGTCACATTCGAAGGCTTGCATGGTATATTAATGGCCCGTTGA 522 0.5728 MCPSGRSLSPPSASAASSSSAAGSAVDSSFRPAFDVLDCDRDGKISRDDLRTFYAGRGSADVDDDLIGTMMVVADTNKDGFVEYDEFETVVLGGGGGKKNGSMSSTTSFLKEMFKVMDKDGDGQLSHRDMKSFMEMAGLAITDEDVDAMITLAGGNRNGGVTFEGLHGILMAR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0827 173 ProSitePatterns EF-hand calcium-binding domain. 38 50 IPR018247 -
Acco04g0827 173 Gene3D - 13 92 - -
Acco04g0827 173 PANTHER CALCIUM BINDING PROTEIN 29 88 - -
Acco04g0827 173 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Acco04g0827 173 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Acco04g0827 173 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Acco04g0827 173 SMART efh_1 29 57 IPR002048 GO:0005509
Acco04g0827 173 SMART efh_1 66 94 IPR002048 GO:0005509
Acco04g0827 173 SMART efh_1 145 173 IPR002048 GO:0005509
Acco04g0827 173 SMART efh_1 109 137 IPR002048 GO:0005509
Acco04g0827 173 CDD EFh 110 164 IPR002048 GO:0005509
Acco04g0827 173 MobiDBLite consensus disorder prediction 1 26 - -
Acco04g0827 173 Gene3D - 96 173 - -
Acco04g0827 173 CDD EFh 30 87 IPR002048 GO:0005509
Acco04g0827 173 FunFam Calcium-binding protein CP1 22 91 - -
Acco04g0827 173 Pfam EF hand 110 136 IPR002048 GO:0005509
Acco04g0827 173 SUPERFAMILY EF-hand 27 171 IPR011992 -
Acco04g0827 173 ProSiteProfiles EF-hand calcium-binding domain profile. 33 60 IPR002048 GO:0005509
Acco04g0827 173 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Acco04g0827 173 Pfam EF-hand domain pair 30 90 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0827 Acco-ChrAcco04 7279558 7280079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0827 1 170 EF-hand Containing Proteins AT5G49480 50.568 6.82e-50 156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g0827 04 7279558 7280079 Acco04g0827 04 7279558 7280079 ECH