LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g0801	ATGACGTTTGTAGCTCTCTTCGTTACCGCCACGAAGCTCGCCGGAGCAGTTGTCACGATCACCGTCGCTGCTAATGCCTTCTCATTCTCCTGTTTCAAGCGAAAGAATCTCCGCCCATTCCGCTCGCCTATTGACGAGTCCTCTGATGTACTCGCTGACTTCAATGCTGATGAAGAGACAAATGGTTTTTTCTTTGGCCTGGCTACTGCACCAGCACATGTTGAGGATAGGCTTAATGATGCTTGGATTCAGTTTGCAGAGGAACAAAAGCCTGACGGTGACTCACAAGAGGTCAAACAGCAAGCTGATGCTTTGATGGGCTCTGCTACTGGTGATGGTGGGTCTCACCAAGCTGCTTCATCTCGACAACATGATTCCACTGTCAAAAAGAGGAAAAAGCCTTTAAAGGTTGCTATGGAGGCCATGATTAGAGGATTTGAGAAGTATTCAGAAGAAGATGAAGAAGAAGCACCAGCTGCTGTGCCAAAAGAAGAACAGCAACACAATATAACTGCTTGGCATAATGTTCCACACCCGGAGGAGAGATTAAGGTTTTGGTCTGATCCTGATACAGAACTGAAGTTGGCCAAAGATACTGGTATTACTGTCTTTCGCATGGGTATAGATTGGTCAAGAATAATGCCAAAGGAACCTGTAAATGGGCTAACAGAATCTGTTAATTATGCTGCTTTGGAGCGTTACAAATGGATTATCAATAGGGTTCGGTCATATGGAATGAAGGTCACGCTCACTCTTTTTCATCACTCACTTCCGCCCTGGGCTGGTGAGTATGGAGGTTGGAAGCTGGAAAAGACTGTTGATTATTTCATGGACTTTACCAGGCTTGTTGTAAACAGTGTATTTGACCTGGTAGAATATTGGGTTACGTTTAATGAACCTCATGTCTTCTGTATGCTTACTTATTGTGCTGGAGCTTGGCCTGGTGGTAATCCTGATATGCTGGAGGTTGCTACTTCTGCTCTTCCAACTGGTGTTTTCCAGCAGGCCATGCATTGGATGGCCATTGCACACTCAAAAGCATATGATTATATCCACGAACAAAGTGACTCATTAAAACCCATAGTTGGTGTAGCTCACCATGTGTCATTCATGCGACCCTATGGTCTGTTTGATGTTGCTGCCGTTTCACTGGCTAATTCCTTGACTATCTTCCCGTACGTTGATAGTATTTCTGACAAGCTGGATTTTATAGGCATAAACTACTATGGGCAGGAAGTTGTTTCTGGTGCGGGACTGAAACTTGTGGAAACAGATGAGTACAGTGAATCTGGTCGTGGGGTATATCCTGATGGCCTGTATCGCATGTTGCTTCAGTTTCATGAAAGATACAAACATCTAAATGTTCCCTTCATCATTACTGAAAACGGTGTATCAGATAAAACAGATGTAATCCGACGGCCATATCTGTTGGAACATTTGCTTGCTGTATATGCAGCCATGATAATGGGTGTTCCTGTGCTTGGTTACCTGTTTTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTCGCAGTTGACCGAGCTAATAATCTTGCACGCAACCCCCGCCCTTCGTACTATCTATTTTCTAAAATTGTGAACACGGGTAAAGTCACACGTGAAGATCGCCACAGAGAATGGAATGAACTACAGAGAGCTGCCAATGAGAAGAAAACAAGACCATTTTATCGGGCTGTAGACAAGCACGGTTTGATGTATGCAGGTGGACTCGATGAACCTATTCAGCGACCTTATATTGAGAGAGATTGGCGGTTTGGTCACTATGAGATGGATGGTCTACAGGATCCTTTGAGCCGCTTCTCAAGATTCATTATCCGGCCATTCTCCCTGAAAAGGAAAAGGAAACCTCAGAAGAAGAGTGACACATTGGTTCTTCAGCCTCTTGAAGCCATATGA	1941	0.4451	MTFVALFVTATKLAGAVVTITVAANAFSFSCFKRKNLRPFRSPIDESSDVLADFNADEETNGFFFGLATAPAHVEDRLNDAWIQFAEEQKPDGDSQEVKQQADALMGSATGDGGSHQAASSRQHDSTVKKRKKPLKVAMEAMIRGFEKYSEEDEEEAPAAVPKEEQQHNITAWHNVPHPEERLRFWSDPDTELKLAKDTGITVFRMGIDWSRIMPKEPVNGLTESVNYAALERYKWIINRVRSYGMKVTLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVNSVFDLVEYWVTFNEPHVFCMLTYCAGAWPGGNPDMLEVATSALPTGVFQQAMHWMAIAHSKAYDYIHEQSDSLKPIVGVAHHVSFMRPYGLFDVAAVSLANSLTIFPYVDSISDKLDFIGINYYGQEVVSGAGLKLVETDEYSESGRGVYPDGLYRMLLQFHERYKHLNVPFIITENGVSDKTDVIRRPYLLEHLLAVYAAMIMGVPVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARNPRPSYYLFSKIVNTGKVTREDRHREWNELQRAANEKKTRPFYRAVDKHGLMYAGGLDEPIQRPYIERDWRFGHYEMDGLQDPLSRFSRFIIRPFSLKRKRKPQKKSDTLVLQPLEAI	646

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g0801	646	Pfam	Glycosyl hydrolase family 1	395	543	IPR001360	GO:0004553\|GO:0005975
	Acco04g0801	646	Pfam	Glycosyl hydrolase family 1	190	375	IPR001360	GO:0004553\|GO:0005975
	Acco04g0801	646	MobiDBLite	consensus disorder prediction	106	134	-	-
	Acco04g0801	646	Gene3D	Glycosidases	145	556	-	-
	Acco04g0801	646	PANTHER	GLYCOSYL HYDROLASE	127	390	IPR001360	GO:0004553\|GO:0005975
	Acco04g0801	646	PRINTS	Glycosyl hydrolase family 1 signature	469	480	IPR001360	GO:0004553\|GO:0005975
	Acco04g0801	646	PRINTS	Glycosyl hydrolase family 1 signature	400	414	IPR001360	GO:0004553\|GO:0005975
	Acco04g0801	646	PRINTS	Glycosyl hydrolase family 1 signature	514	526	IPR001360	GO:0004553\|GO:0005975
	Acco04g0801	646	PRINTS	Glycosyl hydrolase family 1 signature	457	465	IPR001360	GO:0004553\|GO:0005975
	Acco04g0801	646	PRINTS	Glycosyl hydrolase family 1 signature	490	507	IPR001360	GO:0004553\|GO:0005975
	Acco04g0801	646	ProSitePatterns	Glycosyl hydrolases family 1 active site.	457	465	IPR018120	-
	Acco04g0801	646	SUPERFAMILY	(Trans)glycosidases	164	550	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g0801	Acco-ChrAcco04	7038222	7043498	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g0801	6	620	Glycoside Hydrolase	AT3G06510	62.923	0.0	855

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco04g0801	04	7038222	7043498	Acco04g0801	04	7038222	7043498	ECH