Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0790 ATGGCTATGTCTCTGGCTCAGCAATTCACCGGCCTCCGCTGCTGTTCTCCTCTCTCTTCTTCTCCTCTCTCTACACCCTTCTCTGCTCCCAACAACCATAAGCGTAATCCCCTTCCCATTGTCGCCTCCGTCGCAATCTCTAATGCGCAGACCAAAGAGAGGCAAAATCTCAAACAGCTATTCGAAGATGCCTACGAGCGTTGCCGCACTGTTCCCATGGAAGGCGTTTCCTTCACTCTCGAAGAGTTTGATTCTGCTCTCGATAAGTATGACTTCGATTCTGAAATTGGCACCAAGGTTAAAGGCACTGTTTTCAATGTAGATGCTAATGGAGCTCACGTTGACATAACTGCAAAGTCGTCAGCATACTTGCCCGTCGAAGAGGCATGCATCCACAGAATTAAACATGTACAAGAAGCAGGCATAGTTCTTGGCTTGAGAGACGAGTTTGTAATCATTGATGAAAACGAAGCTGATGATAGCTTGATCTTGAGTTTAAGGCGTATGCAGTATGACCTTGCTTGGGAACGCTGTAGACAACTTCAAGCAGAAGATGTTGTTGTCAAGTGTAAGATTCTCGGTGCTAATAAAGGTGGGGTTGTGGCATTGGTTGAAGGCCTTAAAGGGTTTGTTCCGTTCTCACAAATATCATCGAAATCAACTGCAGAAGAGCTTCTAGAAACGGAGCTTCCTCTGAAGTTTGTGGAGGTGGATGAGGAGCAGTCTAGACTTATTCTCAGTAATCGCAAGGCCATGGCTGACAGCCAGGCACAGCTGGGCATTGGATCAGTGGTCACTGGCTCTGTTCAAAGTTTGAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTTCTTCATGTCAGTCAGATCAGTCACGATCGGGTAACTGATATCTCAACTGTTCTTCAACCTGGTGATACTCTCAAGGTGATGATCTTAAGTCATGATCGGGAGAGAGGCCGAGTAAGTCTTTCCACAAAGAAGTTAGAACCCACACCAGGAGACATGATTCGCAATCCTAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCCCAAACATTCAGACAGAGAATTGCCCAAGCTGAAGCTATGGCTCGTGCGGACATGCTTAGGTTCCAGCCTGAGAGTGGATTAACTCTCAGCAGTGATGGGATATTGGGACCATTTTCTTCAGACTTGCCTGCAGAGGGACTGGATTTGAGTGAAGTGCCCCCCGCCGAAGAATTAGAATTAGAAGCAGACGCAGAAGAAGAAGAAGAATAA 1272 0.467 MAMSLAQQFTGLRCCSPLSSSPLSTPFSAPNNHKRNPLPIVASVAISNAQTKERQNLKQLFEDAYERCRTVPMEGVSFTLEEFDSALDKYDFDSEIGTKVKGTVFNVDANGAHVDITAKSSAYLPVEEACIHRIKHVQEAGIVLGLRDEFVIIDENEADDSLILSLRRMQYDLAWERCRQLQAEDVVVKCKILGANKGGVVALVEGLKGFVPFSQISSKSTAEELLETELPLKFVEVDEEQSRLILSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPFSSDLPAEGLDLSEVPPAEELELEADAEEEEE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0790 423 ProSiteProfiles S1 domain profile. 185 249 IPR003029 GO:0003676
Acco04g0790 423 SUPERFAMILY Nucleic acid-binding proteins 261 340 IPR012340 -
Acco04g0790 423 ProSiteProfiles S1 domain profile. 262 330 IPR003029 GO:0003676
Acco04g0790 423 Coils Coil 347 367 - -
Acco04g0790 423 CDD S1_RPS1_repeat_hs4 262 330 - -
Acco04g0790 423 CDD S1_RPS1_repeat_ec2_hs2 185 249 - -
Acco04g0790 423 MobiDBLite consensus disorder prediction 384 423 - -
Acco04g0790 423 Gene3D - 178 255 IPR012340 -
Acco04g0790 423 SUPERFAMILY Nucleic acid-binding proteins 180 253 IPR012340 -
Acco04g0790 423 FunFam 30S ribosomal protein S1, chloroplastic 179 255 - -
Acco04g0790 423 Pfam S1 RNA binding domain 261 330 IPR003029 GO:0003676
Acco04g0790 423 Pfam S1 RNA binding domain 184 247 IPR003029 GO:0003676
Acco04g0790 423 ProSiteProfiles S1 domain profile. 97 167 IPR003029 GO:0003676
Acco04g0790 423 Gene3D - 80 177 IPR012340 -
Acco04g0790 423 MobiDBLite consensus disorder prediction 406 423 - -
Acco04g0790 423 PANTHER 30S RIBOSOMAL PROTEIN S1 52 401 - -
Acco04g0790 423 SUPERFAMILY Nucleic acid-binding proteins 92 192 IPR012340 -
Acco04g0790 423 FunFam 30S ribosomal protein S1 258 337 - -
Acco04g0790 423 FunFam 30S ribosomal protein S1 81 178 - -
Acco04g0790 423 Gene3D - 256 334 IPR012340 -
Acco04g0790 423 SMART S1_6 260 330 IPR022967 -
Acco04g0790 423 SMART S1_6 183 249 IPR022967 -
Acco04g0790 423 SMART S1_6 95 167 IPR022967 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0790 Acco-ChrAcco04 6847477 6850747 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g0790 04 6847477 6850747 Acco04g0790 04 6847477 6850747 ECH