Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2315 ATGGGCTCAGTTGCGCCTTCTAGGACAACTGAAGTGGATATGAAGGAGAGGCAAGTTGTGAGCTTCAGGCGGAGGAACATTGCTTTGCCATCTTGGCATCAGCAGAGCTCCAGTTACGGTCGTTTTGCTTACCAGGATGTGTCTAGTGATGATTCCGATTTGGAATCGGGGTCTCCTCTGCAACAAATGGGTGGTTCATCCCTTGATAACATTGATGAGTGGAGATGGAAGCTGACCATGCTTCTTCGCAACAAAAATGAGCAAGAAGTAATTTCAAGGGATAAAAAGGACAGACGTGATTTTGAGCATCTCTCAGCTTTAGCGACTAGGATGGGTTTATATAGCCGGCTATATTCAAAAGTAGTTGTCTTTAGCAAGGAACCTCTGCCTAATTACAGATCTGATCTGGATGATAAGCGTCCACAGAGGGAGGTTGTCATACCTTTCCGTGTTCATGGAGAAGTAAATTCTCTTCTCAATGCTCACCTCTCTAAAAAGTCTAGAAGCTTTGGAGGCGTTGTAGATACATCCTTCCATAGATCAAGCAGTGCTCTTGCGGATGAAGGAATTCTTGAGGAGCCAGAGCCCTTAGCACAGAATAATGTTGTCAGGGATAAAATCCTTCGACGAAGAAGTTTGAAATTGCGTTCTCAACAAGAAGAATGGCAGGAGTCTCCTGAAGGACAAAAGATGCTTGAATTTCGTAGATCTCTTCCTGCATTCAAGGCGAAGGATGCATTATTGAAAGCCATTTCAGAGAACCAGGCTGTTGTGGTCTCAGGTGAAACTGGTTGCGGTAAGACCACGCAACTTCCACAATATATATTGGAGTCTGAGATTGAAGCTGCACTTGGTGCTTTCTGTAGCATAATTTGTACTCAGCCTAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAGCGTGGGGAAAAATTGGGAGAATCTGTTGGTTACAAGGTTCGGCTGGAGGGTATAAAAGGAAGGGATACTCGTCTTCTTTTTTGCACTACAGGTGTATTGTTGAGGAGACTACTTGTAGACAGAAATCTAAAAGGTGTGACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTCCTTGTTGTCTTAAAGGATCTCCTTCCACGCCGTCCAGACCTTAGGTTAATTTTGATGAGTGCAACCTTAAACGCTGAGCTTTTTTCTTCCTACTTTGATGGAGCTCCAACTTTACATGTACCTGGCTTTACATATCCAGTTCGAGCGCATTTTCTTGAGGATATTCTGGAAATGACTAGATATCGGTTGACACCTTATAATCAAATTGATGATTATGGTCAAGAGAAGACGTGGAAAATACAAAAACAGGTTCAAACTTTGAGAAAAAGAAAGACCCAGATTGCTTCTGCTGTTGAGGATGCACTTGAAGCTGCTGATTTCAAGGAGTACAGCTTATGCACCCGGGAATCATTATCCTGCTGGAGTCCTGATTCAGTTGGTTTTAACCTTATCGAACATGTTCTCTGCCACATTGTCAAGAATGAAAGGCCGGGTGCTATTTTGGTTTTTATGACTGGTTGGGATGACATAAATTCTTTAAAGGTTCAGCTCCAAGCTCACCCTCTGTTGGGCGATCCAAGCAAAGTTTTGCTTCTTGCATGCCATGGCTCAATGGCCAGCTCTGAGCAGAGGTTGATATTTGATAATCCTGAAGGAGGAGTGAGGAAAATAATTCTTGCTACTAACATGGCTGAGACTAGTATTACCATCAATGATGTCGTCTTTGTGATTGATTGCGGGAAAGCAAAAGAGACATCTTATGATGCACTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAGGCTGCTGCTCGGCAGAGAAGAGGAAGGGCAGGACGTGTTCAACCCGGCGAATGTTACCATCTTTATCCTAGATGTGTTTATGATACTTTTGCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTACAATCCCTATGTCTTCAAATCAAAAGTCTAAACCTTGGCAGCATTTCAGAATTCCTATCCAGAGCTCTGCAACCACCAGAGCCTCTGTCGGTTCAAAATGCTGTTGAATATTTGAAGATTATTGGGGCCTTGGATGACAATGAAAATTTGACAGTTTTAGGTCGTAACTTATCAATGCTCCCTGTAGAGCCAAAACTTGGAAAGATGCTTATCTTGGGAGCTATCTTAAACTGTTTAGATCCCATAATGACTGTTGCTGCGGGTCTTAGTGTTAGAGATCCATTTTTGATACCATTTGACAAGAAGGATCTTGCAGAGTCTGCCAAGGCCCAGTTTGCTGCTGGTGCCTATAGTGATCATGTTGCACTTGTTCGGGCTTATGAGGGTTGGAGCGATGCAGAAGCACAGAAAGCAGGTTATGAGTACTGTTGGAGAAATTTCCTCTCTTCACAAACACTTCGAGCCATTGACTCTCTTCGAAAGCAGTTTTTTTACTTGCTCAAAGATATAGGGTTGGTTGATTATAATACTGACAATTGCAATGCATGGAGTCATGATGAGCATCTGGTCCGAGCGGTCATTTCAGCTGGTTTATTTCCTGGAGTATGTTCTGTTGTGAACAAAGAAAAGTCAATAGCATTGAAAACAATGGAGGATGGTCAAGTTCTTCTGTATGCTAACTCTGTAAATGCCAGTGTACCCAAAATTCGATTCCCATGGCTGGTATTCAATGAAAAGGTGAAAGTGAATTCAGTATTCCTCCGGGATTCAACTGGTATATCAGATTCAATGCTTCTCTTATTTGGTGGGAATGTTTCCAGAGGTGGACTGGACGGTCACCTGAAAATGCTGGGGGGATATTTGGAATTTTTCATGAATCCTGCCTTAGCTGAAACTTACTTAAGCCTGAAGAAGGAGCTGGAGGAATTAATACATAGAAAACTTCTGGATCCCAAGTTGGATATACAATCATCTGTTGAGCTTCTTTCAGCTGTGAGATTGCTAGTATCGGAGGACCAGTGTGCTGGGAAATTTGTCTTTGGTCGTCAAGTGTTATCAGCATCAAATAAGAAAAAAGATTCCAAATATAATTCCATTGAGAGTAGTAATTATAAAAACCGGCTGCAAACATTGCTTGCCAGGGCTAGACATGAACCGCCAACTTACAAAACAAAACAACTTAAAAACAACCAGTTCCGCTCTACTGTCATATTCAATGGCTTGAATTTTGTAGGCCAGCCTTCCAACAGCAAGAAGCAAGCAGAACAGGACGCTGCTTCTGAGGCTCTTCTGTGGTTGATGGGGGATAAACATTTATCTACTGATGATATTGGCGAGCTGCAATCATTGCTTGGCAGGGCTCGACATAATCCATCGAATAAGGCATCAAAGAAGGGAGAAGACTCCAAAATTAGTTCTGTTGAGAGCGGTGATCATAAAGGCCAGATGCAAACATTGCTTGCCAGGGGTCGAAAAGGCCCGCTGGAAAACTCTAGAAGTAGTTCTGTTGAGAGTGGTGATTATAAAGGCCAGGTTCAAACATTGCTTGCCAGGGCTGGGCATGAACCACCAACTTACAAAACAAAACAAGTGGGAAGCTACCAATTCCGTTCTACCGTCACATTCAATGGCTTGAATTTTGCCGGCAACCCTTGCAACAGCAGGAAAAAAGCAGAAAGTGATGCTGCTGCTGAGGCTCTTCTATGGTTAAAGGGTGATACCCGTCCACAAGATGATTATGATGATGATGATGTTGTTGATGATATGTCTTTCCCTTTCACAAAGAGCAACAAAAGAAGCAAAATTTCACTGAATGGTGGTAGAAGAAGATGA 3834 0.4244 MGSVAPSRTTEVDMKERQVVSFRRRNIALPSWHQQSSSYGRFAYQDVSSDDSDLESGSPLQQMGGSSLDNIDEWRWKLTMLLRNKNEQEVISRDKKDRRDFEHLSALATRMGLYSRLYSKVVVFSKEPLPNYRSDLDDKRPQREVVIPFRVHGEVNSLLNAHLSKKSRSFGGVVDTSFHRSSSALADEGILEEPEPLAQNNVVRDKILRRRSLKLRSQQEEWQESPEGQKMLEFRRSLPAFKAKDALLKAISENQAVVVSGETGCGKTTQLPQYILESEIEAALGAFCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLVVLKDLLPRRPDLRLILMSATLNAELFSSYFDGAPTLHVPGFTYPVRAHFLEDILEMTRYRLTPYNQIDDYGQEKTWKIQKQVQTLRKRKTQIASAVEDALEAADFKEYSLCTRESLSCWSPDSVGFNLIEHVLCHIVKNERPGAILVFMTGWDDINSLKVQLQAHPLLGDPSKVLLLACHGSMASSEQRLIFDNPEGGVRKIILATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDTFADYQLPELLRTPLQSLCLQIKSLNLGSISEFLSRALQPPEPLSVQNAVEYLKIIGALDDNENLTVLGRNLSMLPVEPKLGKMLILGAILNCLDPIMTVAAGLSVRDPFLIPFDKKDLAESAKAQFAAGAYSDHVALVRAYEGWSDAEAQKAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVDYNTDNCNAWSHDEHLVRAVISAGLFPGVCSVVNKEKSIALKTMEDGQVLLYANSVNASVPKIRFPWLVFNEKVKVNSVFLRDSTGISDSMLLLFGGNVSRGGLDGHLKMLGGYLEFFMNPALAETYLSLKKELEELIHRKLLDPKLDIQSSVELLSAVRLLVSEDQCAGKFVFGRQVLSASNKKKDSKYNSIESSNYKNRLQTLLARARHEPPTYKTKQLKNNQFRSTVIFNGLNFVGQPSNSKKQAEQDAASEALLWLMGDKHLSTDDIGELQSLLGRARHNPSNKASKKGEDSKISSVESGDHKGQMQTLLARGRKGPLENSRSSSVESGDYKGQVQTLLARAGHEPPTYKTKQVGSYQFRSTVTFNGLNFAGNPCNSRKKAESDAAAEALLWLKGDTRPQDDYDDDDVVDDMSFPFTKSNKRSKISLNGGRRR 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2315 1277 SMART DRBM_3 1038 1101 IPR014720 -
Acco02g2315 1277 SMART DRBM_3 1175 1238 IPR014720 -
Acco02g2315 1277 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 857 939 IPR011709 -
Acco02g2315 1277 Pfam Helicase associated domain (HA2) 701 774 IPR007502 GO:0004386
Acco02g2315 1277 Gene3D - 680 784 - -
Acco02g2315 1277 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 678 IPR001650 -
Acco02g2315 1277 MobiDBLite consensus disorder prediction 1127 1142 - -
Acco02g2315 1277 FunFam DExH-box ATP-dependent RNA helicase DExH3 500 656 - -
Acco02g2315 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 817 IPR027417 -
Acco02g2315 1277 CDD SF2_C_RHA 495 646 - -
Acco02g2315 1277 Pfam Helicase conserved C-terminal domain 506 637 IPR001650 -
Acco02g2315 1277 SMART ultradead3 236 429 IPR014001 -
Acco02g2315 1277 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1037 1102 IPR014720 -
Acco02g2315 1277 Gene3D - 498 656 IPR027417 -
Acco02g2315 1277 MobiDBLite consensus disorder prediction 1162 1176 - -
Acco02g2315 1277 MobiDBLite consensus disorder prediction 1121 1176 - -
Acco02g2315 1277 Gene3D - 1159 1242 - -
Acco02g2315 1277 Gene3D - 1016 1106 - -
Acco02g2315 1277 Pfam DEAD/DEAH box helicase 246 399 IPR011545 GO:0003676|GO:0005524
Acco02g2315 1277 SMART helicmild6 532 638 IPR001650 -
Acco02g2315 1277 CDD DEXHc_RHA-like 254 414 - -
Acco02g2315 1277 Pfam Double-stranded RNA binding motif 1038 1100 IPR014720 -
Acco02g2315 1277 Pfam Double-stranded RNA binding motif 1175 1237 IPR014720 -
Acco02g2315 1277 SUPERFAMILY dsRNA-binding domain-like 1036 1108 - -
Acco02g2315 1277 SUPERFAMILY dsRNA-binding domain-like 1173 1241 - -
Acco02g2315 1277 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 248 415 IPR014001 -
Acco02g2315 1277 PANTHER ATP-DEPENDENT RNA HELICASE 195 986 - -
Acco02g2315 1277 FunFam Putative ATP-dependent RNA helicase DHX36 680 784 - -
Acco02g2315 1277 FunFam DExH-box ATP-dependent RNA helicase DExH3 192 416 - -
Acco02g2315 1277 MobiDBLite consensus disorder prediction 1238 1277 - -
Acco02g2315 1277 Gene3D - 195 416 IPR027417 -
Acco02g2315 1277 SMART ha2_5 700 791 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2315 Acco-ChrAcco02 20307420 20319429 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g2315 02 20307420 20319429 Acco02g2315 02 20307420 20319429 ECH