Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1937 ATGAATTCCGACGCTCCTGTAACGACAATCAAGGGTGGCAGAGGCAAGTCTAAGGCCAAATCCGTATCCAGGTCTCATAAAGCAGGTCTTCAGTTTCCCGTTGGCCGCGTTGCTCGTTATCTCAAAGTTGGTCGCTATGCCCAGCGTGTTGGATCTGGCTCCCCTGTTTACCTCTCCGCAGTTCTTGAGTATCTTGCCGCTGAGGTTTTGGAATTGGCTGGGAATGCTGCTAGGGACAACAAGAAGACCAGGATTATACCTAGGCACATTCAACTCGCTGTTAGGAACGATGAAGAGTTAAGCAAACTGTTGGGGTCTGTGACCATTGTGAGTGGGGGCGTGCTGCCGAAAATCCATCCCAATTTATTACCCAAGAAGAATCTAAAGGACAAGCCTATTGTTGGCTCTGCCAACATTTCGAAAGCCGTCCACGCGACAATGAGTTCTGCTGGATCGACCAAAGGTGGAAGGGGTAAGCCGAAATCTTCTAAATCTGTTTCTAGGTCTCAGAAGGCTGGTCTTCAATTTCCTGTTGGACGCATCGCTCGCTTTCTCAAGGCCGGAAAGTATGCCGAACGTGTTGGCGCCGGTGCTCCCGTCTATCTCTCTGCCGTATTGGAATATCTTGCTGCTGAGGTTCTTGAGCTTGCTGGCAATGCTGCTAGAGATAACAAGAGGAATCGCATTGTTCCAAGGCATATTCAGCTTGCTGTACGTAATGACGAGGAGTTAAGTAAGCTCTTAGGATGTGTCACTATTGCCAATGGTGGTGTTTTGCCAAATATTCATCAAAATCTCCTGCCAAAGTCGATGGGGAATGGAAAAGGCGATATTGGATCAGCATCCCAAGAATTCTAA 858 0.4825 MNSDAPVTTIKGGRGKSKAKSVSRSHKAGLQFPVGRVARYLKVGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLGSVTIVSGGVLPKIHPNLLPKKNLKDKPIVGSANISKAVHATMSSAGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKRNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQNLLPKSMGNGKGDIGSASQEF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1937 285 SMART h2a4 11 129 IPR002119 GO:0000786|GO:0003677|GO:0030527
Acco02g1937 285 SMART h2a4 153 273 IPR002119 GO:0000786|GO:0003677|GO:0030527
Acco02g1937 285 PRINTS Histone H2A signature 164 186 IPR002119 GO:0000786|GO:0003677|GO:0030527
Acco02g1937 285 PRINTS Histone H2A signature 250 268 IPR002119 GO:0000786|GO:0003677|GO:0030527
Acco02g1937 285 PRINTS Histone H2A signature 193 208 IPR002119 GO:0000786|GO:0003677|GO:0030527
Acco02g1937 285 PRINTS Histone H2A signature 208 221 IPR002119 GO:0000786|GO:0003677|GO:0030527
Acco02g1937 285 PRINTS Histone H2A signature 222 236 IPR002119 GO:0000786|GO:0003677|GO:0030527
Acco02g1937 285 ProSitePatterns Histone H2A signature. 28 34 IPR032458 -
Acco02g1937 285 Pfam C-terminus of histone H2A 242 275 IPR032454 -
Acco02g1937 285 Pfam C-terminus of histone H2A 98 129 IPR032454 -
Acco02g1937 285 Pfam Core histone H2A/H2B/H3/H4 16 95 IPR007125 GO:0003677
Acco02g1937 285 Pfam Core histone H2A/H2B/H3/H4 137 239 IPR007125 GO:0003677
Acco02g1937 285 ProSitePatterns Histone H2A signature. 172 178 IPR032458 -
Acco02g1937 285 PANTHER HISTONE H2A 157 269 IPR002119 GO:0000786|GO:0003677|GO:0030527
Acco02g1937 285 MobiDBLite consensus disorder prediction 145 171 - -
Acco02g1937 285 Gene3D Histone, subunit A 147 276 IPR009072 GO:0046982
Acco02g1937 285 Gene3D Histone, subunit A 9 133 IPR009072 GO:0046982
Acco02g1937 285 FunFam Histone H2A 8 134 - -
Acco02g1937 285 CDD H2A 11 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Acco02g1937 285 SUPERFAMILY Histone-fold 13 129 IPR009072 GO:0046982
Acco02g1937 285 CDD H2A 158 269 IPR002119 GO:0000786|GO:0003677|GO:0030527
Acco02g1937 285 FunFam Histone H2A 154 277 - -
Acco02g1937 285 MobiDBLite consensus disorder prediction 1 25 - -
Acco02g1937 285 SUPERFAMILY Histone-fold 167 269 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1937 Acco-ChrAcco02 15485294 15488085 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1937 02 15485294 15488085 Acco02g1937 02 15485294 15488085 ECH