Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1682 ATGTTGGTTCCGTCACTTGCGGCTCATCTGTTTCCTCCATTGAAGAACAAAACCAACGCCCGGTTTCTCTGTTTGGCTCTTCCAAACACTCGCTCTGTTTCTTCCATGAACTCGGCCTCTGTCTTCTGTTTTGAATGGTCGTCCGTCTTGCCTCACTGGAAATCTTCCCTTGTTCATGGGTATCTCCCGTTTCTGCTCTCACTCACACATGGGTTAGTTTATCTGGATTCTATTGTCATGGATTCTTCTTTCAATTCCTGTTCTGGGTTCCGCCCTTCATATTCTTCTCTATCTTCGGCACTTCTGCCTTTTATGGTTTATTTTGGGGATTTTCTTGATTCATTGAAGAATAATTTCGATATTTTGGGTTCAGAGGATTTTGTTTTCCCTTCCGAATTTCCAATCTCTGGGTCGTTTCTATTCAGAGTTAGGTTTATTGTCTGTCGTTTATCACCTGTTCGGAGCACCTCGCTATTTCTTATGATTGGCTGGCTCTTTTCAAAGTTTGGGAAGTCCAAAGTCTCTGGCTTTCCTGTTAAGTTTCACCGCATCCTATTAATGGAGAATTCATCTGATGTGCTTGGCTCAAAAGGCTTGATTAAAAAAGTTGAATTTGTGAGGATAATCATTCAGTGCTTATATGCATTAGGGTATAGTAAGTCTGCATCATGCTTGGAATTGGAATCTGGTATTTCATTCAAGTCTGCAGAATTTCAGTTGCTTGAATCACAAATACTTAATGGGGATTGGGATGGTTGCATCAGCACTCTTAATTTACTAAAGGATATGATTGATGAAACTAGAGAATCTGCTCTGTTTCTTGTCTTCAGACAGTGTCTTCTTGAGTATTTGAGTTGTGGCCAAGATTCTCTAGCTTTGAATGTATTAAGGAAACAGGTCGCCACATTACATGTGGACAAATGCAAAGTTCACAGCCTGGCCAATAGCTTGCTTTCCTTGAAGGATACAGAATTAGGTTTAATAGATGATACCATCGTCCATGATTTGCGAAGAAAGTTGTTAACTGACTTGGAGAAATTGCTCCCTCCTCCAATTACAGTACCTGAAAGAAGGCTGGAGCATTTAGTAGAAAGTACTCTTACTTCCTGGATTGATTCTTGTATATATCATTGTTCATCAAATCCAATTTCACTTTATGAAGACCATTGTTGTAGCCGGGATCTCATCCCTACCGAAACCACTCAGATCTTGACTGGGCATAAAAATGAAGTTTGGTTTGTGCAATTTTCTAATAATGGGGAGTACCTTGCCTCTTCATCTAATGATTGTACAGCAATCATATGGAAGGTGCTGGAAGACAGGGAACTGACACTTAAACACACACTACAAGGTCACCAAAATCCGGTATCTTTTGTAGCATGGAGTCCTGATGACACTAAGTTGCTCACATGTGGGAATGCGGAAGTCTTGAAGCTGTGGGATGTTGAAACAGGTACTTGCAAGCACACATTTGGGAATCATGACTTCGTTGTGAGCTCTTGTGCCTGGTTTCCCAACTCAAAGAATATTGTGTGTGGCAGCTCCGAAAAAGAAAAGGGCATCTGCATGTGGGATTGTGATGGAAACAAGCTAAAAGCTTGGAGAGGAGTTAGGATGCCCAAAGTTCTAGACCTTGCTGTTACATCAGATGGGGAGCACCTTATCACCATATTCGTGGATAAAGAGATTCGGATTTTGCATCTGGGAACGAATACAGAACGAGTCATCTCGGAGGAGCACCCGATCACATCCCTTTCAGTTTCAGGAGATGGCAAGTTCTTCATTGTCAATCTAAACAGCCAGGAGATACATATGTGGGATGTTGATGGGAAATGGGACAAGCCATTGAGGTACCAGGGTCATGAGCAACGCAAATATGTGATAAGATCATGCTTTGGTGGATTGAATAGCACATTCATTGCCAGTGGTAGTGAGGATTCTCAGGTCTACATTTGGAACCGGAAGAACTCAAAGCCAATAGAGGTTTTATCTGGGCACACACTGACTGTGAATTGTGTGAGCTGGAACCCTAGAAGACCACAAATGCTGTCATCTGCAAGTGATGATTATACAATTCGTATATGGGGACCCAGCTCATTAAAAAAAGAATGA 2112 0.4176 MLVPSLAAHLFPPLKNKTNARFLCLALPNTRSVSSMNSASVFCFEWSSVLPHWKSSLVHGYLPFLLSLTHGLVYLDSIVMDSSFNSCSGFRPSYSSLSSALLPFMVYFGDFLDSLKNNFDILGSEDFVFPSEFPISGSFLFRVRFIVCRLSPVRSTSLFLMIGWLFSKFGKSKVSGFPVKFHRILLMENSSDVLGSKGLIKKVEFVRIIIQCLYALGYSKSASCLELESGISFKSAEFQLLESQILNGDWDGCISTLNLLKDMIDETRESALFLVFRQCLLEYLSCGQDSLALNVLRKQVATLHVDKCKVHSLANSLLSLKDTELGLIDDTIVHDLRRKLLTDLEKLLPPPITVPERRLEHLVESTLTSWIDSCIYHCSSNPISLYEDHCCSRDLIPTETTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDRELTLKHTLQGHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGTCKHTFGNHDFVVSSCAWFPNSKNIVCGSSEKEKGICMWDCDGNKLKAWRGVRMPKVLDLAVTSDGEHLITIFVDKEIRILHLGTNTERVISEEHPITSLSVSGDGKFFIVNLNSQEIHMWDVDGKWDKPLRYQGHEQRKYVIRSCFGGLNSTFIASGSEDSQVYIWNRKNSKPIEVLSGHTLTVNCVSWNPRRPQMLSSASDDYTIRIWGPSSLKKE 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1682 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 445 IPR001680 GO:0005515
Acco02g1682 703 PANTHER WD REPEAT PROTEIN 26-RELATED 188 698 - -
Acco02g1682 703 Pfam WD domain, G-beta repeat 658 695 IPR001680 GO:0005515
Acco02g1682 703 Pfam WD domain, G-beta repeat 445 481 IPR001680 GO:0005515
Acco02g1682 703 Pfam WD domain, G-beta repeat 485 525 IPR001680 GO:0005515
Acco02g1682 703 Pfam WD domain, G-beta repeat 400 436 IPR001680 GO:0005515
Acco02g1682 703 Pfam WD domain, G-beta repeat 618 653 IPR001680 GO:0005515
Acco02g1682 703 SUPERFAMILY WD40 repeat-like 394 695 IPR036322 GO:0005515
Acco02g1682 703 CDD WD40 401 695 - -
Acco02g1682 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 636 662 IPR001680 GO:0005515
Acco02g1682 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 404 437 - -
Acco02g1682 703 FunFam WD repeat-containing protein 26 homolog 391 696 - -
Acco02g1682 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 703 - -
Acco02g1682 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 703 IPR001680 GO:0005515
Acco02g1682 703 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 234 291 IPR006595 -
Acco02g1682 703 SMART WD40_4 611 653 IPR001680 GO:0005515
Acco02g1682 703 SMART WD40_4 569 607 IPR001680 GO:0005515
Acco02g1682 703 SMART WD40_4 484 525 IPR001680 GO:0005515
Acco02g1682 703 SMART WD40_4 397 436 IPR001680 GO:0005515
Acco02g1682 703 SMART WD40_4 656 696 IPR001680 GO:0005515
Acco02g1682 703 SMART WD40_4 527 567 IPR001680 GO:0005515
Acco02g1682 703 SMART WD40_4 442 481 IPR001680 GO:0005515
Acco02g1682 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 449 485 - -
Acco02g1682 703 Gene3D - 396 699 IPR015943 GO:0005515
Acco02g1682 703 SMART Lish 201 233 IPR006594 GO:0005515
Acco02g1682 703 ProSiteProfiles LIS1 homology (LisH) motif profile. 201 233 IPR006594 GO:0005515
Acco02g1682 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 490 IPR001680 GO:0005515
Acco02g1682 703 SMART ctlh 234 291 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1682 Acco-ChrAcco02 12900874 12904417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1682 368 555 Miscellaneous Gene Families AT5G08390 26.842 1.38e-13 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1682 02 12900874 12904417 Acco02g1682 02 12900874 12904417 ECH