Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1606 ATGGTCAGCGCCGGAAGCGTCCGACGATCCCTGCAAGGCCTCGACTTCCGAGCTTTTGGCTGCGTCATTCAGCAGTGCACGGACCATGGTCTTGTTCGCCAAGCCAAGCAACTACATGCTCGCCTTATCCTGTTCTCAGTCACACCCGACAACTTCCTTGCCTCAAAGCTCATCACTTTCTACGCCAAATCCAACCTCATCTTCGAAGCGCGTAGGGTATTCGATGAAATTCCTCACAGAAATGTTTTCTCCTGGAATGCCATAATCATTGGCTACTCATCTAACGGTCTGTTCCATCATGCGCTGAAGCTTTTTTCCTCTTTATCGTTCTCCGCCAGTGCCCAACCTGATAGTGTTTCTGTTACTTCTGTTTTGAAGGTGCTGGCTTCATCGTCTTCTAGTCCCACCTTTGGAAAACAAATTCATGGTTATGTTCTTCGGCGTGGCTTGGATTCCAACGTTTTTGTTCTAAATGCTCTGGTAACGTATTACTCCAAATGTGATCTGCTCGGATTCGCGAGGACTATATTTGACAGAATGCCCGGAAGAGACATTGTGTCGTGGAATGCTATGATTGCTGGGTATTCTCAGAATGGGTTTTATGAAGAATGCAAGCAACTTTACTTAAAGTTGCTAGGTTCAACGGGGTTTAATCCTGATGCATTGACATTTGTTAGTGTGCTGCAAGCCTGTGCTCAGTCAAAGGATCTAATATTCGGAATGGAAGTCCACCGTTTAATCAGTGACACTCAAATCGAGATGGATATTTCACTTTGTAATGCTTTGATTGGAATGTATGCAAAATGTGGGAACTTGGATTATGCTCAGGAATTGTTTGAAGAAATGGGTGAGAAGGATGCATTTACTTATGTTTCAATCATTTCAGGGTATATGTTTTATGGGTTTGTTGACAAAGCCATGACCTTGTTCCGAGAAATGAGACATCCTGGATTAAGCACCTGGAATGCTGTAGTATCTGGTTTGGTCCAAAACAACCAGCACGAACGAGTCTTGGATTTAATTCAAGAAATGCAGGCTTCAGGTTATAGACTAAATACCGTTACACTTTCTAGCATCCTCCCTGCATTTTACCACTTTTCAAACCTGAAAGGAGGGAAAGAGATACATGCTTATGCTATCAGGAGAAGTTTTGACCAAACTATATACGTTGCGACCGCCATAATTGATACTTATGCAAAGTTGGGGTTTATTCATGGGGCACAACGGGTTTTTGATCAATCCGAATGCAGGAGCTTAGTAATTTGGACAGCAATTATATCAGCTTATACTTCTCATGGAGATGCTAGTTCGGCCCTCAGTCTCTATGGGCAGATGCTAAATAGCGGAGTTCATCCTGACCCTGTGACATTAACAACAGTACTGGCTGCTTGTGCTCATTCTGGACAAGTGGACAAAGCTTGGGAAATCTTCAACACAATGTCCTTTAAATATGGAATTCAGCCCTTGGCAGAGCACTATGCTTGCATGGTGGATGTTCTTAGTCGAGCTGGTAAGCTATTGGAAGCAGCAGACTTCATTTCTGAAATGCCAGTTGAACCAAGTGCTAGAGTTTGGGGTGCTTTGCTGCATGGGGCTTCAGTTTACGGTAATGTGGAAATGGGCAAGTTTGCCTGCGATCATTTGTTCAAGATTGAGCCTGAGAATACTGGGAATTACATAATTATGGCAAATTTATTTTCACAAGCTGGGAGATGGGAAGAAGCTAAGAAAGTTAGGGGGAAAATGAAAGAGATAGGGTTAAAGAAGATTCGTGGGAGTAGCTGGATTGAAACAAGTGGAGGATTAGTAAGCTTTATCGCAAAGGATGTTTCAAATGTAAGATCTGATGAGATTTACGCATTGTTGGAAGGATTGCTCGGATTAATGAGAGAAGGATATATTGTGCAAGAAGTGTTAGATGATGAAAGTTCCATCGTCAATGGCAAGGTTTTGGGAGAAAGTCTGGATTTGACCAAATACGTTGATTCAAACTTTGAAGGGCCATCTTTGTTTCCAGTGATCCTGTCAATAGCGAGTTCAGTGAGCAGTCCTGCTTTGGTTACTTGGAGAATGCTGTTGGTGGGTATTGCCTATGTTCCATTTGTTGAAAGATTCCAAGTCGTCGTTTTTGAAGTTTTCAAGCATGACGTCACAGAAGGAAAACTTGCTACATGGATTGAGGAAGTGAACAAGATTGGTGCATATACCCAGAGAAGAAATGATGCTAAGGAAGTCGTCGACATATTCAAGAAGCCTTTTTTGTTCAACAGTGAACATCAAATGGCAGCGGGGGCATCCAAGATGCAAATTGTGTCCTATAAAAATCAGTTATGTCGCTTCATTGATCATTCACCAACTGTTTGA 2364 0.426 MVSAGSVRRSLQGLDFRAFGCVIQQCTDHGLVRQAKQLHARLILFSVTPDNFLASKLITFYAKSNLIFEARRVFDEIPHRNVFSWNAIIIGYSSNGLFHHALKLFSSLSFSASAQPDSVSVTSVLKVLASSSSSPTFGKQIHGYVLRRGLDSNVFVLNALVTYYSKCDLLGFARTIFDRMPGRDIVSWNAMIAGYSQNGFYEECKQLYLKLLGSTGFNPDALTFVSVLQACAQSKDLIFGMEVHRLISDTQIEMDISLCNALIGMYAKCGNLDYAQELFEEMGEKDAFTYVSIISGYMFYGFVDKAMTLFREMRHPGLSTWNAVVSGLVQNNQHERVLDLIQEMQASGYRLNTVTLSSILPAFYHFSNLKGGKEIHAYAIRRSFDQTIYVATAIIDTYAKLGFIHGAQRVFDQSECRSLVIWTAIISAYTSHGDASSALSLYGQMLNSGVHPDPVTLTTVLAACAHSGQVDKAWEIFNTMSFKYGIQPLAEHYACMVDVLSRAGKLLEAADFISEMPVEPSARVWGALLHGASVYGNVEMGKFACDHLFKIEPENTGNYIIMANLFSQAGRWEEAKKVRGKMKEIGLKKIRGSSWIETSGGLVSFIAKDVSNVRSDEIYALLEGLLGLMREGYIVQEVLDDESSIVNGKVLGESLDLTKYVDSNFEGPSLFPVILSIASSVSSPALVTWRMLLVGIAYVPFVERFQVVVFEVFKHDVTEGKLATWIEEVNKIGAYTQRRNDAKEVVDIFKKPFLFNSEHQMAAGASKMQIVSYKNQLCRFIDHSPTV 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1606 787 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 389 615 - -
Acco02g1606 787 Pfam PPR repeat family 419 465 IPR002885 -
Acco02g1606 787 NCBIfam pentatricopeptide repeat 420 453 IPR002885 -
Acco02g1606 787 NCBIfam pentatricopeptide repeat 455 488 IPR002885 -
Acco02g1606 787 NCBIfam pentatricopeptide repeat 320 352 IPR002885 -
Acco02g1606 787 NCBIfam pentatricopeptide repeat 186 221 IPR002885 -
Acco02g1606 787 Pfam PPR repeat 83 106 IPR002885 -
Acco02g1606 787 Pfam PPR repeat 288 315 IPR002885 -
Acco02g1606 787 Pfam PPR repeat 493 517 IPR002885 -
Acco02g1606 787 Pfam PPR repeat 259 285 IPR002885 -
Acco02g1606 787 Pfam PPR repeat 319 348 IPR002885 -
Acco02g1606 787 Pfam PPR repeat 186 211 IPR002885 -
Acco02g1606 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Acco02g1606 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 219 IPR002885 -
Acco02g1606 787 Gene3D Tetratricopeptide repeat domain 240 316 IPR011990 GO:0005515
Acco02g1606 787 Gene3D Tetratricopeptide repeat domain 4 139 IPR011990 GO:0005515
Acco02g1606 787 Gene3D Tetratricopeptide repeat domain 317 371 IPR011990 GO:0005515
Acco02g1606 787 Gene3D Tetratricopeptide repeat domain 372 463 IPR011990 GO:0005515
Acco02g1606 787 Gene3D Tetratricopeptide repeat domain 140 239 IPR011990 GO:0005515
Acco02g1606 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Acco02g1606 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 285 IPR002885 -
Acco02g1606 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 488 IPR002885 -
Acco02g1606 787 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 320 633 IPR046960 GO:0003723|GO:0009451
Acco02g1606 787 Pfam E motif 535 597 IPR046848 -
Acco02g1606 787 FunFam Pentatricopeptide repeat-containing protein At4g14850 138 238 - -
Acco02g1606 787 SUPERFAMILY TPR-like 426 578 IPR011990 GO:0005515
Acco02g1606 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Acco02g1606 787 Gene3D - 689 755 - -
Acco02g1606 787 Gene3D Tetratricopeptide repeat domain 464 595 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1606 Acco-ChrAcco02 12300010 12303432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1606 2 634 Glycoside Hydrolase AT3G49170 28.966 2.63e-94 311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1606 02 12300010 12303432 Acco02g1606 02 12300010 12303432 ECH