Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1547 ATGATCAACGCACCCAACGGCATGATGTCCCCGTCTTCATCCGCTACCGCCCAGTTCCCTAGTCTCAAGACTTATTTCAAGACTCCTGAAGGTCGCTATAAACTTCAGTACGAGAAGACACATCCTTCCGCCCTCCCTCACTATGCCCTCGGCAAAACCGTCTCTCAGATAACCCTTGCACATCTCAAGGAGAAGCCAGCTCCTTCGACGCCAACTGCCCCACCATCAAGTTTTAGTGCCAGCAGTGGGGTACGGTCAGCGGCTGCTAGATTGTGGGGAGGTGGCAATGGAAGCCGCGCACTTAGTTTTGTTGGAGGGAATGGTAGCAGCAAGAATATTGGGGTAAACAGCAGGATTGGTTCTCTTGGTGCCTCAAGTTCAAGTAGTTTAATGGCTAATTCAAATTTTGATGGAAAAGGAACGTACTTGATCTTCAATGTTAGTGATGCAATTTTTGTTAGTGTATTGAATTCTCAAGACAAGGATCCCATAAAGTCCATTCACTTCAGTAATTCAAATCCTGTGTGCCACGCTTTTGATGAGGAAGCGAAGGATGGACATGATTTGCTTATTGGTTTGAGTACGGGTGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTCGGTAAAAAGCTTGTAGGAGCTCATCATTACAACAAGGATGGTTCTGTCAACAACAGTCGTTGTACTAGTATTGCATGGATTCCTGGAGGTGATGGTGCTTTTGTTGTTGCTCATGCCGATGGGAATTTGTATGTATATGAAAAGAACAAAGATGGTGCTGGAGAATCTTCATTCCCTGTTATCAAGGATCAAGCACAGTTTTCTGTTTCTCATGCACGTTACAACAAGAGCAATCCAGTGGCTAGATGGCATATATGTCAGGGTTCAATTAACAGTATTTCTTTCTCAAATGATGGTGCATACTTAGCAACTGTTGGAAGAGATGGTTATTTGCGAGTGTTTGATTTCTCTAAGGAACAACTTGTATGTGGTGGTAAAAGTTATTATGGCGCTCTGTTATGTTGTGCTTGGAGCATGGATTCTAAATATATTTTGACTGGAGGAGAAGATGATCTTGTGCAAGTTTGGAGCATGGAGGACCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGGTCAGCGGAGTGGCTTTCGATTCATATTGGACATCACCAAATTCAGATGATAGTACTGAAACTGTTATGTACCGGTTTGGATCTGTTGGTCAGGATACACATTTGCTTCTTTGGGACCTCGAAATGGATGAGATTGTGGTACCTTTGCGGCGTGCACCTGGTGGATCCCCCACTTACAGTGCTGGGAGCCAGTCAGCTCACTGGGACAGTGTTGCCCCGTTGGGTACACTGCAACCTGCTCCAAGCATGCGTGATGTTCCTAAAATCTCGCCTCTTGTCACTCATCGTGCTCACACAGAACCCCTTTCAGGTGTGATATTCACCCAGGAATCTGTACTCACTGCTTGTCGGGAAGGACACATTAAAATCTGGACGAGACCTGGGATAACTGAGAGCCAACCAAGCAGCTCTGAAACCTTGCTGGCTGCCAGCTTGAGGGAGAAACCACTATTACCAAGCAAGGTTAGCAATACTAGTTACAGACAATGA 1638 0.4579 MINAPNGMMSPSSSATAQFPSLKTYFKTPEGRYKLQYEKTHPSALPHYALGKTVSQITLAHLKEKPAPSTPTAPPSSFSASSGVRSAAARLWGGGNGSRALSFVGGNGSSKNIGVNSRIGSLGASSSSSLMANSNFDGKGTYLIFNVSDAIFVSVLNSQDKDPIKSIHFSNSNPVCHAFDEEAKDGHDLLIGLSTGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSIAWIPGGDGAFVVAHADGNLYVYEKNKDGAGESSFPVIKDQAQFSVSHARYNKSNPVARWHICQGSINSISFSNDGAYLATVGRDGYLRVFDFSKEQLVCGGKSYYGALLCCAWSMDSKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWTSPNSDDSTETVMYRFGSVGQDTHLLLWDLEMDEIVVPLRRAPGGSPTYSAGSQSAHWDSVAPLGTLQPAPSMRDVPKISPLVTHRAHTEPLSGVIFTQESVLTACREGHIKIWTRPGITESQPSSSETLLAASLREKPLLPSKVSNTSYRQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1547 545 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 334 IPR001680 GO:0005515
Acco02g1547 545 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Acco02g1547 545 SMART WD40_4 471 508 IPR001680 GO:0005515
Acco02g1547 545 SMART WD40_4 286 325 IPR001680 GO:0005515
Acco02g1547 545 SMART WD40_4 328 367 IPR001680 GO:0005515
Acco02g1547 545 SMART WD40_4 211 257 IPR001680 GO:0005515
Acco02g1547 545 SMART WD40_4 370 422 IPR001680 GO:0005515
Acco02g1547 545 PANTHER WD REPEAT PROTEIN 13 521 - -
Acco02g1547 545 SUPERFAMILY WD40 repeat-like 163 508 IPR036322 GO:0005515
Acco02g1547 545 Gene3D - 12 515 IPR015943 GO:0005515
Acco02g1547 545 Pfam WD domain, G-beta repeat 297 325 IPR001680 GO:0005515
Acco02g1547 545 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1547 Acco-ChrAcco02 11867298 11871976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1547 302 429 Miscellaneous Gene Families AT5G08390 21.094 6.34e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1547 02 11867298 11871976 Acco02g1547 02 11867298 11871976 ECH