Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1512 ATGGAAGCTGCAAATAATTTGTATAGTTCATCCCCTTTTCCTTCCAGAACTAATCACTGGAGCGGTCTTCCCTCTTCTTCTTCATCTTCGTCTTTAGTTTTCACATTTTATGAACAAGCCACTCCCGCAGTTACGTCTAGGTCTGCTAGTTTTGCTGCCCAGCATTTTCCCACTTCGGTTCTTCTACAAGAACAACGTGATGATTGCAGACCTATACTGCGCATGCATAAGGAAGAAAAGACATCCCAGGCAACATTGAATACTAGGCAGATGGATATGGCCTCAGTTCGTGAAGACCATAACCATGACAACGCTGATCAACTAGTGCTTGACTTTAAGCAGCAATTGCAAATTTGGCCTTGTTTACGGAACTTGTTGACATCCTTACCAGCAGGTGAAATTGCAGCATCATCAACTCTGCAGCCTATCACCATTGACTCAGAGAATACTGCAGAAGTTGAAGAGCATGATGCAGTTGCTCTTGCTAAGCAAGCATTGTCAGCCTCTAAACAAGCTGCCTCGATAGCAACAGCTTTGGAATCAATCAAAGCTAATGATGATGATTTACCTCCTCTAGGTCTGGCCTCCACAAGTTTGGATGACATTTCACTTGGAAAGAATAAAATTGTGAGATCAACCCGGCTTCTAGAGAGACAATCAAAGAAGAGAAAAAAATCAAAGGCAAAAGTCTCAGATGAAGAAAGCTATCTTTCTAAAAAGGCTGAAGTAAAACGAAGGTTAAATATAGAAAAGAAGATAAACGAAGGGTTTGATCAAAATGATCCTCTGCGCTTGTTCCTATGGGGTCCTGAAACAAAGCAACTTTTGACTCTTGAAGAAGAATCTCAATTGATTCTTCAGCTACAGGATTTATTCAGATTGGAAGGAGTAAAGAGAAGACTTAAATTGCAATTTGGGCGGGAACCAACTTTGGCTGAGTGGGCTGATGGTGTGGGCCTCACCTGTCAAGCCCTGCAGTTACAGCTTTATTCTGGTAACAGCAGCCGAGATAAGCTGATTTATGCAAATTTACGAATGGTAGTTCACATTGCTAAACAGTATCGGGGGCGTGGTCTCAGTTTTCAGGACTTATTGCAGGAGGGAAGTATGGGGCTTATGAAGAGTGTTGAGAAGTTTAAACCCCAAGCAGATTGCCGTTTCGCTTCTTATGCCTTCTGGTTGATAAGGCAAACAATTAGGAAGGCCATATTTCAACATTCCAGGACCATTCGTCTGCCGGAGAATGTACATACCCTCTTGGGCAAGGTATCAGAGACAAAGAAATTGTACATTCGAGAAGGAAATCTTCATCCCACCAAAGAAGAACTAGCAAGAAGGGTAGGAATTACAGTAGAGAAGCTAGAAAAGTTGTCATATGCTGCAAGAATTCCAATTTCAATGCAACAAACAGTGTGGTCAGACCAAGATACCACTTTCCAGGAGGTTACTGCAGACACAGCGGTTGAGGTCCCTGATGTGAGTATTGCAAAACAGATGATGAGGAGGCATGTGCGAAACCTGTTGAGTGTCTTGAACCCAAAAGAAAAGAGGATAATCCGTCTAAGATTTGGCATCGAGGATGGAAGACAGAATTCACTATCGGAGATTGGAAACAAATTTGGTCTAACTAAGGAAAGGGTTCGACAGTTAGAGGGCCGGGCGTTGTACAAGCTGAAGCAGTGCCTTGGCAGCCATGGACTTGATGCATATGCAGAATTGCTTGTGTAG 1728 0.4288 MEAANNLYSSSPFPSRTNHWSGLPSSSSSSSLVFTFYEQATPAVTSRSASFAAQHFPTSVLLQEQRDDCRPILRMHKEEKTSQATLNTRQMDMASVREDHNHDNADQLVLDFKQQLQIWPCLRNLLTSLPAGEIAASSTLQPITIDSENTAEVEEHDAVALAKQALSASKQAASIATALESIKANDDDLPPLGLASTSLDDISLGKNKIVRSTRLLERQSKKRKKSKAKVSDEESYLSKKAEVKRRLNIEKKINEGFDQNDPLRLFLWGPETKQLLTLEEESQLILQLQDLFRLEGVKRRLKLQFGREPTLAEWADGVGLTCQALQLQLYSGNSSRDKLIYANLRMVVHIAKQYRGRGLSFQDLLQEGSMGLMKSVEKFKPQADCRFASYAFWLIRQTIRKAIFQHSRTIRLPENVHTLLGKVSETKKLYIREGNLHPTKEELARRVGITVEKLEKLSYAARIPISMQQTVWSDQDTTFQEVTADTAVEVPDVSIAKQMMRRHVRNLLSVLNPKEKRIIRLRFGIEDGRQNSLSEIGNKFGLTKERVRQLEGRALYKLKQCLGSHGLDAYAELLV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1512 575 Gene3D - 412 489 IPR036388 -
Acco02g1512 575 NCBIfam sigma-70 family RNA polymerase sigma factor 335 562 IPR014284 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 Gene3D RNA Polymerase Primary Sigma Factor 105 411 - -
Acco02g1512 575 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 412 485 IPR013324 -
Acco02g1512 575 Gene3D - 494 574 IPR036388 -
Acco02g1512 575 ProSitePatterns Sigma-70 factors family signature 1. 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 Pfam Sigma-70 region 3 420 491 IPR007624 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 CDD Sigma70_r4 501 559 - -
Acco02g1512 575 MobiDBLite consensus disorder prediction 1 21 - -
Acco02g1512 575 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 471 570 IPR013324 -
Acco02g1512 575 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 259 409 IPR013325 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 PRINTS Major sigma-70 factor signature 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 PRINTS Major sigma-70 factor signature 511 523 IPR000943 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 PRINTS Major sigma-70 factor signature 532 547 IPR000943 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 PRINTS Major sigma-70 factor signature 547 558 IPR000943 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 PRINTS Major sigma-70 factor signature 387 395 IPR000943 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 Pfam Sigma-70 region 2 340 408 IPR007627 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 ProSitePatterns Sigma-70 factors family signature 2. 532 558 IPR000943 GO:0003700|GO:0006352|GO:0006355
Acco02g1512 575 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 153 571 - -
Acco02g1512 575 Pfam Sigma-70, region 4 507 560 IPR007630 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1512 Acco-ChrAcco02 11600525 11604627 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0818 06 5396623 5411665 Acco02g1512 02 11600525 11604627 CCT
Acco02g1512 02 11600525 11604627 Acco02g1512 02 11600525 11604627 ECH