LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco02g1443	ATGGATGGATCTCGTAAACACCAGGTTTCCTTGAGAGGAGCAAGCGCAAAGGAGATAACAAGGGATGCCCTTCTTGAGAAGGTTTCCCGGGAAAGAGAACTTCGCAATTATGCAAAACGGGCTACTGCTTCTGCTCTGTTTATTCAGGGAGTATGGAGGCGCTTCAAGGTTACAAGGATGGTTGCTCAGCAGCTTCAGCAGGAGTGGGAGACATTGGTGAACCGCTACAATAGTGTTATGACAGCAATGTGGATTGCTAACAATTTGTTGCGACCGTTTCTTTTCTTTATAAGCCGGTTCTCATCTGAGCATCATAGGGATCAGAGCAAGAAAATAGACTCTATGAGGATTTGCTTTACAATCCTATTGGAAAGCCTGAACTCTTCTGATTCAAAGAGGAACTTCTTCTCTCTAGCAGTTGGTACACCTGAAGAAAGGAGAATTTGGGGTCACCAAGCTCGAGGGCTGATTTCTGTTGGCTTTGTCATTCTTTCAGAGTTTAGTAAAGGCATTTCGAGAAATCAAGATATTACCATGGTTACCTCCCTTGCAATGCGTGTTCTTGTTATGTTAACTGATCTGAAAGGATGGAAAGGCATTACTGATGACAATCGTCAAGATGCGGATATAGCAGTGAAAGGTTTGATTGAGTACATGGGGAGTAATTCTAGTGGTAGTTATGTGTCTATCAGTAGATATATTAGTTCATTGGATATCTGTTCTTCACAAACAAAGAATATTAACCAGACAGATGATAAATTTTTAATCACTGCAAGTACAATAACTTTGGCTTTGCGGCCATTCTATTTGAGAAACTCTGATGTCAATGTCCCTGCTATGTTGGATGTGGACCATGCTGCTAGGCAGTATTGTGTATACTTGCTGGCAATTCCTTGGCTTGTGAAGCGTCTGCCACCTCTTCTTCGACCTGCTATAAAGCACAATTCTATTTTGTTCCCATGCTTTCTTGGCATATTGATTTTGAGAGAGAATATTTCAATGGAGATATCACATTTGATTCATTTAGATACTTTTATCTCTTCCAAGGCAATTCCATCAGTTGGATGGGTTCTCACTAACATTATCTGCCTAGCAATGGGGAATGAAAATGAATCTGTGGATCCTCAATGCTTCCATCAAGGTTTAGACCATGCATTATATGTCCATGTTGTAAACTATCTTGCAGAAACCTTACTGTCTCATCTTTATAAAATTGGATGGAATAAAAAGGGGAAGGAAGCTGTTCAGAATGACGTTGAAGCTTCAGCAGAACCCATGGACACAGTTCTTTATGAGAATGAAGAAGCATACGATTCCTTACTGATTTCTTACATAGATCAATTTAGGCCTGTTTGTCAGCATTGGCATCTTCAAAATCTTTTGGCGGCAGCAAACAAAGATGCCACAGACAGGGCTGGGATTCTGCTTCCAAATGGTCTGGAATACTTGGGAAAGCTGAATTTAAGTGATATTGCTCTTTTGTATTCAAACATGCTAAAAATATATTCAATCTTGAATCCAATTCGTGACTCTTTGCCAGTTCTCAACATGCTATCCTTTACTCCTGGATTTCTTGTCAAGGTGTGGAATGTACTAGAGGATTCCATTTTTCATGGAGACAATCACACTTCTGATTACCAAATGAGTGGAAAAAGCAAACATGGTGCATCTGAGAGCAGGCTAAAACGTGTCAGTAAGGATGGGGCTAATAAGTGGACCAGTGTTCTTCATAAATTAACTGGTAAGTCTCATGCTGCTATGAATAATGCTGAACCCACCAGCAGTCATGCTGAGCCTAGCCAAACAAATGAGGATTCATCTGATGTATGGGACATAGAGCCTATGAGGCGTGGTCCACAAGGCATTTCTAAAGATACATTTGCTCTACTTCATATATTCTGTGCCACCTATTCTCACCTACTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAAGAGGTTCCATTCAAATTAGAGAAGCAACGAAGAATTGCATCAATGCTCAATACTCTGGTGTATAATGGCTTGTCCCATGGTATTAGTGAGCAGAATAGATCCCTCATGAACAGTGCTATCAGATGCTTACATTTAATGTATGAAAGGAATTGTCGGCATCAATTTTGTCCTCCTGATTTGTGGCTTTCCCCTGGTAGAAAAAGCCGGCCTCCTATTGCAATGGCTGCCAGAACTCATGAAATTTCATCCGTCAATATAAAATATGATGATTCATTGACTGTGGGTTCTGTTATCACCACAACTCCTCATATTTTCCCTTTTGAAGAGAGAGTAGAGATGTTTCGAGAGTTCATTAAGATGGATAAAGCCTCCCGAAAAATGGCTGGGGAAATATTTGGACCTGGTTCACGAGCAATTGAGATAGTAGTACGTCGGGGTCATGTTGTTGAAGATGGATTTCGTCAACTAAATTCCCTTGGGACAAGGTTGAAGTCATCCATCCATGTATCTTTTGTGAGTGAATGTGGCCTTCCTGAGGCTGGCTTGGATTATGGCGGGTTATCTAAAGAATTTCTAACTGACATATCAAAAGCAGCCTTTTCCCCAGAATATGGACTATTTTCCCAAACCTCAACCTCGGACACGCTTCTAATGCCAAATTCTTCTGCAAGATTTTTGGATAGTGGTCTTCAGATGATTGAGTTTCTTGGAAGAGTCGTCGGTAAAGCTCTTTATGAAGGAATATTACTTGATTACTCTTTCTCACATGTGTTTGTACAAAAATTATTGGGGAGATATAGTTTTCTTGACGAGTTATCAACACTTGATCCAGAGTTATACAGGAATCTTATGTATGTCAAGCATTATGATGGTGATGTCAAGGACCTCTCTCTTGATTTTACTGTTACTGAAGAATCATTTGGGAAATGGCATGTTGTTGAGCTAAGGTCTGGTGGCAAAGATATCCTGGTGACGAATGAGAATAAAATGCAGTACATACATGCAATGGCAGACTACAAACTTAATCAACAGATCTTGCCCTTCTCAAATGCATTCTATACCGGATTGACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCAAGTGAATTTAATCAGTTGCTTTCAGGTGGGAAGTATGATATTGATATTGATGATTTAAAAAATAACACACGATACACAGGTGGTTATAATGAAGGAAGCCGGACAATCAAGATATTTTGGGAGGTGATTAAAGACTTTGAACCCCAAGAACGATGTATGCTTCTCAAATTTGTCACTAGTTGTTCCCGTGCTCCATTGCTTGGGTTCAAATATTTACAGCCAACTTTTACTATCCAAAAGGTTCCTAGTGATGTTCCTCTTTGGGCGACATTTGGAGGACAAGATGTTGAGCGGCTTCCTTCAGCTTCAACCTGTTACAATACCCTCAAGCTTCCAACCTACAAACGTGCAAGCACTTTGAGAACAAAGCTTCTATATGCAATCAGTTCAAATGCCGGATTTGAACTCTCTTAG	3480	0.4011	MDGSRKHQVSLRGASAKEITRDALLEKVSRERELRNYAKRATASALFIQGVWRRFKVTRMVAQQLQQEWETLVNRYNSVMTAMWIANNLLRPFLFFISRFSSEHHRDQSKKIDSMRICFTILLESLNSSDSKRNFFSLAVGTPEERRIWGHQARGLISVGFVILSEFSKGISRNQDITMVTSLAMRVLVMLTDLKGWKGITDDNRQDADIAVKGLIEYMGSNSSGSYVSISRYISSLDICSSQTKNINQTDDKFLITASTITLALRPFYLRNSDVNVPAMLDVDHAARQYCVYLLAIPWLVKRLPPLLRPAIKHNSILFPCFLGILILRENISMEISHLIHLDTFISSKAIPSVGWVLTNIICLAMGNENESVDPQCFHQGLDHALYVHVVNYLAETLLSHLYKIGWNKKGKEAVQNDVEASAEPMDTVLYENEEAYDSLLISYIDQFRPVCQHWHLQNLLAAANKDATDRAGILLPNGLEYLGKLNLSDIALLYSNMLKIYSILNPIRDSLPVLNMLSFTPGFLVKVWNVLEDSIFHGDNHTSDYQMSGKSKHGASESRLKRVSKDGANKWTSVLHKLTGKSHAAMNNAEPTSSHAEPSQTNEDSSDVWDIEPMRRGPQGISKDTFALLHIFCATYSHLLLVLDDIEFYEKEVPFKLEKQRRIASMLNTLVYNGLSHGISEQNRSLMNSAIRCLHLMYERNCRHQFCPPDLWLSPGRKSRPPIAMAARTHEISSVNIKYDDSLTVGSVITTTPHIFPFEERVEMFREFIKMDKASRKMAGEIFGPGSRAIEIVVRRGHVVEDGFRQLNSLGTRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQTSTSDTLLMPNSSARFLDSGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKDLSLDFTVTEESFGKWHVVELRSGGKDILVTNENKMQYIHAMADYKLNQQILPFSNAFYTGLTDLISPSWLKLFNASEFNQLLSGGKYDIDIDDLKNNTRYTGGYNEGSRTIKIFWEVIKDFEPQERCMLLKFVTSCSRAPLLGFKYLQPTFTIQKVPSDVPLWATFGGQDVERLPSASTCYNTLKLPTYKRASTLRTKLLYAISSNAGFELS	1159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco02g1443	1159	CDD	HECTc	791	1157	IPR000569	GO:0004842
	Acco02g1443	1159	SMART	hect_3	809	1159	IPR000569	GO:0004842
	Acco02g1443	1159	Gene3D	Hect, E3 ligase catalytic domain	1034	1158	-	-
	Acco02g1443	1159	ProSiteProfiles	HECT domain profile.	815	1159	IPR000569	GO:0004842
	Acco02g1443	1159	SUPERFAMILY	Hect, E3 ligase catalytic domain	791	1152	IPR035983	GO:0004842
	Acco02g1443	1159	FunFam	E3 ubiquitin-protein ligase UPL7	1034	1158	-	-
	Acco02g1443	1159	FunFam	Putative Ubiquitin-protein ligase E3C	917	996	-	-
	Acco02g1443	1159	Pfam	HECT-domain (ubiquitin-transferase)	846	1159	IPR000569	GO:0004842
	Acco02g1443	1159	Gene3D	Hect, E3 ligase catalytic domain	917	996	-	-
	Acco02g1443	1159	Gene3D	Hect, E3 ligase catalytic domains	793	1031	-	-
	Acco02g1443	1159	PANTHER	UBIQUITIN-PROTEIN LIGASE E3C	6	1159	IPR044611	GO:0000209\|GO:0061630
	Acco02g1443	1159	MobiDBLite	consensus disorder prediction	583	615	-	-
	Acco02g1443	1159	MobiDBLite	consensus disorder prediction	586	608	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco02g1443	Acco-ChrAcco02	10923573	10933436	Transposed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco02g1443	02	10923573	10933436	Acco02g1443	02	10923573	10933436	ECH