Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0997 ATGGCCAAAGGCGTAGTCTCAGACGACGAAGGAGAGGTCGAACTCGAAGAGGAGGATAGGGAGCCAGTTGATGGAGATGGTGATGATGAAGAGGACGAGGACGAAGAAGAGGAAGGTCAGGATGAATATGAGAATGATGGATTTATAGTTGACGACGTTGAGGAAGAGGAGGAACAAGATGAGGAAGAGAGGGCAGAAAGTGATGAGGAACGGCAGAAGAAGAAGAAAAGGAAGAAAAAGGAGGATTATGTTCTGGATGAAGATGATTATGCTCTTCTAGAGGACAATAATATCAATATTCACCGTAGGAAGGAGAGCAAAAAGTTTAAGAGGCTGAAAAAAGGCCAGAGGGACACTGAGGATGAGCCCTCTGGATTATCTGATGAGGAGGAATTTGCTGGAAGCGGTAAAGGTGGGCGAACTGCCGAGGAGAAGCTTAAGCGCAGCTTGTTTGGTGATGATGAAGGAGCTCCACTTGAAGATATTGTTGAAGAGGAGGAACAGGGAGAAGAGGAGGAAGATGCAGACATTGGTGAAGAAGATGAGATGGCGGACTTCATTGTGGAAGAGGATGAAGTTGATGAGCACGGGGCTCCCATGAGGCGAAAGAAGCTGAAGAAAAAGAAAGCTAGGCAAGCACCAGGAGTGTCTTCTTCTGCATTGCAAGAAGCTCAGGAATTATTTGGTGATGTTGATGAGTTGCTGCAGTCTCGCAAGCAAAGTCTGGAACTACGTGAATATAGAGAGACTAGGCTTGAAGATGAATTTGAGCCTGTTGTCCTTTCTGAGAAATATATGACAGAGAAGGATGATCGAATTAAGGAGCTTGATATTCCAGAGAGAATGCAGATATCAGAGGAGAGTACTGGTGCACCTCCGCTGGATGAGGGAATTATGGAAGAGGAGGGTCAATGGATATATGATCAGCTTAAAAAGGGAATGGTGCCTTGGATTCACAAGAAAGATGCTGGCAATTTACAGATTAACACTCGTGATATCATCAGATTTTTGGAACTGCATCATGTACAGAAGCTGGACATTCCATTTATTGCTATGTATCGGAAGGAGGAGTGCTCAAGCCTATTGAAAAATACTGAGCAACCTGAGGATGAGACTTGGGATAAAAATGAGAAGCCTCCAACTTTAAAATGGCACAAGGTGCTTTGGGCAATTCAAGACTTGGATCAAAAGTGGTTGCTTCTTCAGAAACGAAAAAATGCCCTCCAAGCCTACTATAATAAACGATTTGAAGAAGAGTCCCGTCGTGTTTATGATGAAACAAGACTCGAATTGAACCAGAAATTGTTTGAGTCAGTTATGAGATCATTGAAGGCTGCAGAATCAGAGAGAGAGGTTGATGATGTTGACTCAAAGTTCAACTTGCATTTCCCTCCAGGGGAAGTTGGTGTTGATGAAGGGCAATTTAAAAGACCTAAAAGGAAATCAACGTATAGTTCTTTCAGTAAGGCAGGGCTTTGGGAGGTTGCAAACAAGTTTGGGCGTAGTGCTGAGCAACTTGGAATGATTTTATCGCTTGAAACAATGATTAACGAGTTGGAGAATCCTAAGGAAACTCCTGAAGAGATGGCTTCAAATTTTACATGTGCGATGTGTGGTACACCTCAAGAAGTACTTAAATATGCTAGGCACATGGCAGCTGTTGAGATTAGTTGTGAGCCTAGCATTAGGAAACATGTCCGTACCAACTTTATTGACCATGCTGTGGTATCAACGTGTCCCATTGCTGATGGAAATGTAACTATAGATTCTTTCCATCAGTTTGCTGGGATAAAGTGGTTGCGGGAGAAGCCATTATCTAAATTTGAGGATGCACAATGGCTCCTTATACAGAAGGCAGAGGAGGAGAAACTCCTTCAAGTTACTATTAAGCTGCCTGAAGAGTATCTTGATAAGTTGACAAATGAATTCAATGATTATTACATCAGCGACAGTGTTAGTAAGTCTGCCCAACTGTGGAATGAACAGAGGAAGTTGATACTGCATGATGCAATTTTTCGCTTTCTCTTACCATCAATGGAAAAAGAGGCAAGAGCTTATTTAACGAGTAAAGCAAAGAATTGGTTACTCATGGAGTACGGGAAGGCACTGTGGAACAAGGTTTCTTTGGGACCTTATCAACGGAAGGATAATGATCTTAGTGCTGATGATGAAGCTGCCCCTAGGGTTATGGCTTGCTGTTGGGGTCCTGGAAAGCCGCAGACAACTTTTGTCATGTTAGATTCATCAGGGGAAGTGCTCGATGTTCTTTACACTGGGTCCCTTACTTTACGATCTCAAAATGTTAATGATCAGCAACGGAAGAAAGATTATCAGGAGCGTGTTCTGAAGTTCATGACGGACCACCAGCCACATGTTGTTGTTCTAGGAGCTGTGAATTTGTCTTGTACTCGTTTGAAGGAAGATATATATGAGATAATTTTTAAAATGGTGGAAGAAAATCCTAGAGATGTTGGTCATGAGATGGATGGCCTCAGCATTGTGTATGGGGATGAATCTCTTCCTCATTTGTATGAAAATTCTCGAATCTCCTCTGAGCAACTGCCCTCACAGAAAGGTATAGTGAGGCGGGCTGTAGCACTTGGAAGGTGTCTGCAGAATCCCTTGGCGATGGTTGCAACATTATGTGGACCTAGAAAAGAAATTTTATCATGGAAACTGAGTTCCTTGGAGAGCTTTCTCAACCCTGATGAGAAGTTTGGGATGGTTGAGCAGATCATGGTAGATGTGACAAATCAGGTGGGCTTAGATGTTAATTTAGCCATAAGTCATGAATGGCTGTTTGCTCCTTTACAGTTTATTTCTGGGCTTGGTCCAAGAAAGGCTGCATCCTTACAGAGGTCCCTAGTAAGAGCTGGAGCAATATTTACACGGAAGGACTTTGTGACAGAACATAAGCTGGGTAAAAAGGTTTTTGTCAACGCTGTAGGTTTCTTGCGTGTTCGGAGGAGTGGATTGGCTGCTAGCAGCAGCCAATTCATTGATTTGCTAGATGATACAAGAATTCATCCTGAGTCATATACTCTTGCACAAGAGTTGGCCAAAGATGTGTATGAGGCCGATGGCACAGGTGATGCAAATGATGACGACGATGCACTGGAGATGGCTATAGAGCATGTGAGAGATCGGCCTAGTTTTTTGAAAAACCTTGATGTTGAAGAATATGCTTCAGCAAAGAAGAGGCTGAATAAAAAAGAAACTTTCTATGACATAAAAAGAGAACTGATTCAGGGATTTCAGGATTGGCGTAAGCAATATGAAGAACCAAATCAGGATGAGGAGTTTTATATGATATCAGGTGAGACTGAGGAGACCCTTGCTGAAGGGAAAATTGTCCAAGCTACAATTCGAAGAGTGCAAGCCCAAAAGGCCATATGTGTGCTTGAATCGGGGTTAACTGGAATTCTCATGAAAGAAGACTACACAGATGACTGGAGGGATTTGGTTGATTTATCTGACAGGCTACATGAGGGTGACATCCTCGCTTGCAAAATCAAATCAATTCAGAAGAATAGGTATCAGGTATTCCTTGTTTGTAGGGAGAGTGAAATGAGAAGTAACCGTTTACAGAGTAACCGTAATCTTGACCCCTATTATTACGAAGACCAGAGCTCTCAACAGAGTGAGCAAGACAAAGCTCGCAAAGAAAAAGACCTTGCAAAGAAACATTTCAAGCCTAGGATGATAGTTCATCCCCGTTTTCAGAACATAACTGCAGACGAAGCAATGGAGTTCTTGTCTGACAAAGAATTTGGAGAAAGTATAATCCGGCCTAGTTCACGTGGACCTTCATTTCTTACTTTAACTCTCAAAATCTATGATGGAGTCTATGCCCATAAAGACATAATTGAAGGTGGAAAGGAACACAAGGACATCACAAGCCTACTTCGAATTGGGAAGACACTGAAAATTGGAGAGGACACTTTTGAGGATTTAGATGAGGTAATGGATCGCTACGTTGATCCATTGGTAGTTCACTTGAAGGCAATGCTAAATTATCGCAAGTTCAAGAAGGGGACAAAAGCAGAAGTTGATGAACTTTTGAGGATGGAGAAAGCTGAGCATCCTATGCGGATAGTCTATAGTTTTGGCATCTCTCATGAACATCCAGGCACATTCATATTGACTTATATAAGAAGCACGAATCCCCACCATGAGTACATTGGGCTTTATCCAAAAGGATTCAAATTCCGGAAAAGGATGTTTGAGGACATTGATCGGCTTGTGGCATATTTCCAGAGGCACATTGACGATCCCCAGCATGATGTGGCACCTTCCATTAGATCAGTTGCTGCTATGGTACCGATGAGAAGCCCGGCCACTGGCGGATCCTCAGGGGCATCAGTGGGTAGTGGGTGGGGTTCTAATGAGGGTGGCTGGAGAAGTCACACAAGTGATAGGGATCGATCATCCACACCTGGTTCCAGGACAGGGCGAACTGATTACAGAAACAGTGGGAATCGGGATGAGCACCCCAGTGGTCTGCCTCGCCCATACGGTAGTGGACGCGGACGTGGTCGAGGCTCATATAACAGCAGGGGAAACAACTCTAATAGTGAAAGGCACGATTCTAGCTTTGGTGCAGCCAGATGGGGTTCCGTCACAAAGGATGGAGCCGATGGTTTAAGCAACTTTCCAGGAGCCAAGGTTCAAAATTCCCCAGGAAGGGAAGCCTTTCCTGGTGGTTGGGGCGATGGTGATGGTGCAAATGATGCAGAGCGTGGAACCTCTGGCTGGGGAAGTGGCACTGGCTGGTGA 4776 0.438 MAKGVVSDDEGEVELEEEDREPVDGDGDDEEDEDEEEEGQDEYENDGFIVDDVEEEEEQDEEERAESDEERQKKKKRKKKEDYVLDEDDYALLEDNNINIHRRKESKKFKRLKKGQRDTEDEPSGLSDEEEFAGSGKGGRTAEEKLKRSLFGDDEGAPLEDIVEEEEQGEEEEDADIGEEDEMADFIVEEDEVDEHGAPMRRKKLKKKKARQAPGVSSSALQEAQELFGDVDELLQSRKQSLELREYRETRLEDEFEPVVLSEKYMTEKDDRIKELDIPERMQISEESTGAPPLDEGIMEEEGQWIYDQLKKGMVPWIHKKDAGNLQINTRDIIRFLELHHVQKLDIPFIAMYRKEECSSLLKNTEQPEDETWDKNEKPPTLKWHKVLWAIQDLDQKWLLLQKRKNALQAYYNKRFEEESRRVYDETRLELNQKLFESVMRSLKAAESEREVDDVDSKFNLHFPPGEVGVDEGQFKRPKRKSTYSSFSKAGLWEVANKFGRSAEQLGMILSLETMINELENPKETPEEMASNFTCAMCGTPQEVLKYARHMAAVEISCEPSIRKHVRTNFIDHAVVSTCPIADGNVTIDSFHQFAGIKWLREKPLSKFEDAQWLLIQKAEEEKLLQVTIKLPEEYLDKLTNEFNDYYISDSVSKSAQLWNEQRKLILHDAIFRFLLPSMEKEARAYLTSKAKNWLLMEYGKALWNKVSLGPYQRKDNDLSADDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKDYQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEIIFKMVEENPRDVGHEMDGLSIVYGDESLPHLYENSRISSEQLPSQKGIVRRAVALGRCLQNPLAMVATLCGPRKEILSWKLSSLESFLNPDEKFGMVEQIMVDVTNQVGLDVNLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYTLAQELAKDVYEADGTGDANDDDDALEMAIEHVRDRPSFLKNLDVEEYASAKKRLNKKETFYDIKRELIQGFQDWRKQYEEPNQDEEFYMISGETEETLAEGKIVQATIRRVQAQKAICVLESGLTGILMKEDYTDDWRDLVDLSDRLHEGDILACKIKSIQKNRYQVFLVCRESEMRSNRLQSNRNLDPYYYEDQSSQQSEQDKARKEKDLAKKHFKPRMIVHPRFQNITADEAMEFLSDKEFGESIIRPSSRGPSFLTLTLKIYDGVYAHKDIIEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVVHLKAMLNYRKFKKGTKAEVDELLRMEKAEHPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHDVAPSIRSVAAMVPMRSPATGGSSGASVGSGWGSNEGGWRSHTSDRDRSSTPGSRTGRTDYRNSGNRDEHPSGLPRPYGSGRGRGRGSYNSRGNNSNSERHDSSFGAARWGSVTKDGADGLSNFPGAKVQNSPGREAFPGGWGDGDGANDAERGTSGWGSGTGW 1591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0997 1591 Gene3D SH2 domain 1335 1430 IPR036860 -
Acco02g0997 1591 Gene3D - 1108 1195 IPR012340 -
Acco02g0997 1591 Gene3D - 483 920 IPR023323 -
Acco02g0997 1591 CDD SH2_Nterm_SPT6_like 1237 1325 IPR035019 -
Acco02g0997 1591 SUPERFAMILY SH2 domain 1240 1326 IPR036860 -
Acco02g0997 1591 MobiDBLite consensus disorder prediction 1514 1530 - -
Acco02g0997 1591 FunFam Transcription elongation factor Spt6 994 1088 - -
Acco02g0997 1591 SMART rnase_8s 727 845 IPR006641 GO:0006139
Acco02g0997 1591 Pfam HHH domain 1002 1089 IPR041692 -
Acco02g0997 1591 FunFam Transcription elongation factor spt6 717 887 - -
Acco02g0997 1591 FunFam Transcription elongation factor spt6 289 471 - -
Acco02g0997 1591 SUPERFAMILY Tex N-terminal region-like 317 706 - -
Acco02g0997 1591 SUPERFAMILY RuvA domain 2-like 1001 1090 IPR010994 -
Acco02g0997 1591 Gene3D - 996 1088 IPR042066 -
Acco02g0997 1591 MobiDBLite consensus disorder prediction 10 65 - -
Acco02g0997 1591 MobiDBLite consensus disorder prediction 157 192 - -
Acco02g0997 1591 FunFam Transcription elongation factor spt6 1108 1196 - -
Acco02g0997 1591 MobiDBLite consensus disorder prediction 66 86 - -
Acco02g0997 1591 Pfam Holliday-junction resolvase-like of SPT6 726 882 IPR028231 -
Acco02g0997 1591 Pfam SH2 domain 1205 1421 IPR035420 -
Acco02g0997 1591 MobiDBLite consensus disorder prediction 1 86 - -
Acco02g0997 1591 FunFam Transcription elongation factor spt6 1223 1334 - -
Acco02g0997 1591 SUPERFAMILY RuvA domain 2-like 898 988 IPR010994 -
Acco02g0997 1591 Gene3D - 289 482 IPR023319 -
Acco02g0997 1591 MobiDBLite consensus disorder prediction 106 218 - -
Acco02g0997 1591 Gene3D SH2 domain 1223 1333 IPR036860 -
Acco02g0997 1591 Gene3D - 717 1107 IPR037027 GO:0006139
Acco02g0997 1591 FunFam Transcription elongation factor spt6 897 990 - -
Acco02g0997 1591 PIRSF Spt6 3 1490 IPR017072 GO:0032968
Acco02g0997 1591 Pfam Helix-turn-helix DNA-binding domain of SPT6 298 414 IPR028088 GO:0003677
Acco02g0997 1591 MobiDBLite consensus disorder prediction 1201 1223 - -
Acco02g0997 1591 ProSiteProfiles S1 domain profile. 1115 1186 IPR003029 GO:0003676
Acco02g0997 1591 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 17 1487 IPR017072 GO:0032968
Acco02g0997 1591 MobiDBLite consensus disorder prediction 133 155 - -
Acco02g0997 1591 CDD SH2_Cterm_SPT6_like 1336 1422 IPR035018 -
Acco02g0997 1591 MobiDBLite consensus disorder prediction 1447 1466 - -
Acco02g0997 1591 Coils Coil 50 82 - -
Acco02g0997 1591 Pfam Acidic N-terminal SPT6 29 118 IPR028083 -
Acco02g0997 1591 FunFam Transcription elongation factor spt6 474 738 - -
Acco02g0997 1591 SUPERFAMILY Ribonuclease H-like 727 882 IPR012337 -
Acco02g0997 1591 Gene3D - 256 990 - -
Acco02g0997 1591 SMART S1_6 1113 1186 IPR022967 -
Acco02g0997 1591 MobiDBLite consensus disorder prediction 1444 1591 - -
Acco02g0997 1591 FunFam Transcription elongation factor spt6 1335 1427 - -
Acco02g0997 1591 SUPERFAMILY Nucleic acid-binding proteins 1110 1190 IPR012340 -
Acco02g0997 1591 Pfam Helix-hairpin-helix motif 886 987 IPR032706 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0997 Acco-ChrAcco02 7011949 7021091 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0997 02 7011949 7021091 Acco02g0997 02 7011949 7021091 ECH