Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0716 ATGACTTCCTTTGACAGACTTGAGATTACTGATTATTGTTGCATGACAGTCATGGACAAGGCGACGCAGTATGGGCGTGTGTTCGAGCTCTTTGACGTAGACGGAGATGGGAGGATATCGGCCAAGGAGCTGCGGCAATGTGTGGAGGCGATAGGTGGGGGGTTGACGGAGGAGGAGGCGGAGGCGGCGGTGGAGTATTTGGACGCCGACGGAGATGGGCTGGTGGGGTTGGAGGACTTTGTGAGGTTTGTGGATGGAGAAGAGGAAGAGAAAGTGAAAGACTTGAGAGAAGCGTTTAAGATGTATGAGATGGAAGAAAGTGGGTGTATAACGCCAAAGAGTTTGAGCAAAATGCTTCGCAGATTAGGTGAATCCAGAAGTGTAGATGAATGTCAAGTCATGATTTCTAGATTTGATCTCAATGGTGATGGCGTCCTCACTTTCGATGAGTTTAAGGTCATGATGTCGTGA 471 0.4883 MTSFDRLEITDYCCMTVMDKATQYGRVFELFDVDGDGRISAKELRQCVEAIGGGLTEEEAEAAVEYLDADGDGLVGLEDFVRFVDGEEEEKVKDLREAFKMYEMEESGCITPKSLSKMLRRLGESRSVDECQVMISRFDLNGDGVLTFDEFKVMMS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0716 156 FunFam Calmodulin A 6 86 - -
Acco02g0716 156 Pfam EF-hand domain pair 26 84 IPR002048 GO:0005509
Acco02g0716 156 SMART efh_1 94 122 IPR002048 GO:0005509
Acco02g0716 156 SMART efh_1 23 51 IPR002048 GO:0005509
Acco02g0716 156 SMART efh_1 59 87 IPR002048 GO:0005509
Acco02g0716 156 SMART efh_1 130 156 IPR002048 GO:0005509
Acco02g0716 156 ProSiteProfiles EF-hand calcium-binding domain profile. 19 54 IPR002048 GO:0005509
Acco02g0716 156 CDD EFh 26 84 IPR002048 GO:0005509
Acco02g0716 156 ProSiteProfiles EF-hand calcium-binding domain profile. 126 156 IPR002048 GO:0005509
Acco02g0716 156 ProSiteProfiles EF-hand calcium-binding domain profile. 55 90 IPR002048 GO:0005509
Acco02g0716 156 ProSitePatterns EF-hand calcium-binding domain. 32 44 IPR018247 -
Acco02g0716 156 ProSitePatterns EF-hand calcium-binding domain. 139 151 IPR018247 -
Acco02g0716 156 Gene3D - 90 156 - -
Acco02g0716 156 Pfam EF-hand domain pair 106 155 IPR002048 GO:0005509
Acco02g0716 156 PANTHER CALCIUM BINDING PROTEIN 86 155 - -
Acco02g0716 156 ProSiteProfiles EF-hand calcium-binding domain profile. 93 125 IPR002048 GO:0005509
Acco02g0716 156 CDD EFh 94 156 IPR002048 GO:0005509
Acco02g0716 156 ProSitePatterns EF-hand calcium-binding domain. 68 80 IPR018247 -
Acco02g0716 156 SUPERFAMILY EF-hand 22 155 IPR011992 -
Acco02g0716 156 Gene3D - 4 89 - -
Acco02g0716 156 FunFam Calcium-binding protein CML38 87 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0716 Acco-ChrAcco02 5048794 5049264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0716 8 155 EF-hand Containing Proteins AT1G76650 47.651 3.95e-41 134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0716 02 5048794 5049264 Acco02g0716 02 5048794 5049264 ECH