Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0509 ATGGCTGTGGTTGCAGTTGCTCTGCACCACCACTTGCTCTACTTCTCGAAATGGAAGACCATCACTTCAACCTCACTGCACAAACCCGTTCTCTTAAGCTCAAGAAAGAAGGCTCTATCTTCTTTCATTTCCTGCTCTTCTTCCTCGTCTTCTACTTCGCAGACTCCAGAAGCTAACACTCAAACCCCGGAATATCACGTCAATCTCGGACTCGAGCTCTTCTCCAAAGGACGGGTAAAGGATGCTTTGGTCCAGTTTGAAACTGCTCTTTCTTTGGACCCCAATCCTATGGAAGCCCAAGCTGCGCTTTATAATAAAGCTTGCTGTCATGCATACAGAGGGGAAGGAAAGAAAGCAGCTGATTGTCTGCGCACAGCTCTGAAGGAATACAACCTAAAATTTGGTACCATTCTCAATGATCCAGACTTGGCCTCTTTCAGAACTTTGCCTGAATTCAAACAACTACAGGAAGAGGCCAGGCTAGGTGGTGAAGATATTGGCTACAGTTTTCGGAGAGACTTAAAACTTATTAGTGAAGTTCAAGCACCATTCCGTGGAATTAGGAGATTCTTCTACATAGCATTTACTGCAGCTGCAGGAATTTCCATGTTCTTTACTGTGCCCAGGCTATTTCGTGCTATTAAAGGGGGGGATGATGCTCCTGATCTTTGGGAAACTGCTGGGAATGCTGCCATCAACATTGGAGGTATTATTGTTCTTGTGGCATTATTCTTCTGGGATAATAAAAAAGAAGAGGAACAACTTGCACAAATATCACGAGATGAGACACTATCAAGGTTGCCTTTGCGTCTTTCAACCAATCGCATAGTAGAACTCGTGCAGCTACGGGACACAGTTAGACCTGTTATATTATCAGGGAAAAAAGAAACAGTATCTCTGGCTTTGCAAAGAGCAGAGAGATTTCGCACCGAGCTCATTAACCGGGGTGTTCTGTTGGTTCCTGTAATCTGGGGAGAAGGTAGGGAAGCAAAAATTGAGAAGAAAGGTTTTGGCCTTTCATCAAAGGCTGCTGCATCTCTTCCATCCATTGGGGAAGATTTTGATGAGCGAACACAATCCATAGTTGCAAAATCGAAGTTGAAAGCTGAAATTAGGTTCAAGGCTGAGGTTATATCACCAGCAGAATGGGAAAGGTGGATAAGGGATCAGCAGAAGGCTGAAGGAGTTACTCCTGATGAAGATGTCTACATTATACTGCGGTTAGATGGTCGTGTTCGAAGATCAGGGAAAGGCATGCCTGACTGGCAACAAATTGTGCAGGAGCTACCGCCAATGGAAGCAATCCTAAGCAAGCTAGAAAGATGA 1326 0.4457 MAVVAVALHHHLLYFSKWKTITSTSLHKPVLLSSRKKALSSFISCSSSSSSTSQTPEANTQTPEYHVNLGLELFSKGRVKDALVQFETALSLDPNPMEAQAALYNKACCHAYRGEGKKAADCLRTALKEYNLKFGTILNDPDLASFRTLPEFKQLQEEARLGGEDIGYSFRRDLKLISEVQAPFRGIRRFFYIAFTAAAGISMFFTVPRLFRAIKGGDDAPDLWETAGNAAINIGGIIVLVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRDTVRPVILSGKKETVSLALQRAERFRTELINRGVLLVPVIWGEGREAKIEKKGFGLSSKAAASLPSIGEDFDERTQSIVAKSKLKAEIRFKAEVISPAEWERWIRDQQKAEGVTPDEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEAILSKLER 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0509 441 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 45 439 - -
Acco02g0509 441 Pfam Tetratricopeptide repeat 63 95 IPR013105 -
Acco02g0509 441 Pfam Low psii accumulation1 / Rep27 171 248 IPR021883 -
Acco02g0509 441 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Acco02g0509 441 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 50 156 - -
Acco02g0509 441 SUPERFAMILY TPR-like 57 129 IPR011990 GO:0005515
Acco02g0509 441 Gene3D Tetratricopeptide repeat domain 36 136 IPR011990 GO:0005515
Acco02g0509 441 SMART tpr_5 63 96 IPR019734 GO:0005515
Acco02g0509 441 SMART tpr_5 100 133 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0509 Acco-ChrAcco02 3621843 3625579 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0509 02 3621843 3625579 Acco02g0509 02 3621843 3625579 ECH