Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0304 ATGATTGTATTTTGTGGGGAGCGTGTAAATAAAAGTCCACTCCTCGGAGTCTCAACATCCCAGCTTCAGCAGCAGCATCCACAGTCACATCTACCTAAGAAAGGGTTTCTCTTCACTATGAGCTTCAAGCATCTGTGGGTAGCTTTCTGTTTATGGGCTTTAACATGCTCACTTCTGCCTTCTTTCTCTTCTGGGATTCTAAGAATTGGTTTGAAGAAGAGACCTCTAGACCTTCAAAGAATTCGGGCTGCAAGAGCTGCAAGGGAAGAACTGAGACCAGGAAGACCTGTGAAGGGTTCATATCAGTATATTAGTAATTCCCGTGATGAAGATATACTACCTCTCAAAAATTATATGGATGCGCAATATTTTGGAGAGATTGGAATAGGCACACCCCCTCAGACCTTCACTGTCATATTTGATACTGGTAGTTCCAACCTGTGGGTTCCATCATCATGGTGCTACTTTTCTGTTGCCTGTTATGTCCATTCTTGGTACAAGGCTAGTAAATCCAGTACATACACTGAGAATGGAACATCATGTGAAATACAATATGGGTCTGGATCATTATCTGGTTTTTTCAGTCAAGATGACGTTAAAGTTGGTGATGTGGTCGTAAAGCATCAAGATTTCATTGAGGCTACTCGAGAGAAAAGTTTTTCCTTTGCACTCGCTAAGTTTGATGGAATACTTGGACTTGGGTTTCAGGAAATCTCAGTTGAGAAAGCAGTGCCGGTTTGGTATAATATGTTGGATCAAGATCTTCTTAGTGAGAAGGTGTTCTCTTTTTGGCTCAATGAGGATCCGGAGGCAGAAACAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCAAATCACTTCAAAGGAAAACATACTTATGTTCCAATCACAAGAAAAGGTTACTGGCAGATTGACATAGGAGATTTCCTCATTGGAGGTATTTCAACAGGTGTGTGCAAAGGTGGATGTGCTGCTATTTTGGATTCAGGAACATCTCTGCTTGCTGGTCCAACCTCAGTTGTGGCTGAAATCAACCATGCCATTGGAGCTGAAGGAGTTGTGAGTTCAGAATGCAAGCAAATAGTTTCTCAATATGGAGAGAGGATATGGGATCTATTAATATCAGGGGTGGAGCCTGATCAAGTATGTTCTCAACTTGGTTTATGCTCTGCATACAGGGATCAATCTAAGAGCAATGGGATCAAAATGGTGACTGAAACAATAGAAAGAGAGGGTATGTCTGTTAGAGATGATAATATGTGCTCTTTGTGTGAGATGGCTGTCGTTTGGGTCCAGAATCAACTTAGGCGGAAGGTAACCAAGGAAAAAGTAATCCACTACATAAATCAGTTATGTGAAAGACTGCCAAGCCCTGGTGGAGAATCCACAATAAGTTGTAATGGTATTTCTCAGATGCCAAACATCACAATTACTATTGGAGATAAACTATTCGACCTCACTCCAGAGCAGTACATTCTGAAAACTGGAGAAGGAAATGCAGCAGTTTGCCTCTCTGGATTTACAGCTTTTGATGTTCCCCCTCCTCGGGGCCCTCTCTGGATCCTTGGAGATGTTTTTATGAGGGTATATCATACGGTATTTGACTATGGCAATCTCCAAGTGGGTTTTGCTAAAGCTGCCTAG 1644 0.4203 MIVFCGERVNKSPLLGVSTSQLQQQHPQSHLPKKGFLFTMSFKHLWVAFCLWALTCSLLPSFSSGILRIGLKKRPLDLQRIRAARAAREELRPGRPVKGSYQYISNSRDEDILPLKNYMDAQYFGEIGIGTPPQTFTVIFDTGSSNLWVPSSWCYFSVACYVHSWYKASKSSTYTENGTSCEIQYGSGSLSGFFSQDDVKVGDVVVKHQDFIEATREKSFSFALAKFDGILGLGFQEISVEKAVPVWYNMLDQDLLSEKVFSFWLNEDPEAETGGELVFGGVDPNHFKGKHTYVPITRKGYWQIDIGDFLIGGISTGVCKGGCAAILDSGTSLLAGPTSVVAEINHAIGAEGVVSSECKQIVSQYGERIWDLLISGVEPDQVCSQLGLCSAYRDQSKSNGIKMVTETIEREGMSVRDDNMCSLCEMAVVWVQNQLRRKVTKEKVIHYINQLCERLPSPGGESTISCNGISQMPNITITIGDKLFDLTPEQYILKTGEGNAAVCLSGFTAFDVPPPRGPLWILGDVFMRVYHTVFDYGNLQVGFAKAA 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0304 547 Gene3D - 353 456 - -
Acco02g0304 547 Pfam Saposin-like type B, region 1 420 456 IPR007856 GO:0006629
Acco02g0304 547 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 138 149 IPR001969 GO:0004190|GO:0006508
Acco02g0304 547 Pfam Saposin-like type B, region 2 357 389 IPR008138 -
Acco02g0304 547 Gene3D Acid Proteases 282 547 IPR021109 -
Acco02g0304 547 FunFam Aspartic proteinase A1 353 456 - -
Acco02g0304 547 ProSiteProfiles Saposin B type domain profile. 353 393 IPR008139 -
Acco02g0304 547 CDD phytepsin 113 545 IPR033869 GO:0004190
Acco02g0304 547 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 325 336 IPR001969 GO:0004190|GO:0006508
Acco02g0304 547 ProSiteProfiles Peptidase family A1 domain profile. 123 544 IPR033121 -
Acco02g0304 547 SMART sapb_4 317 389 IPR008139 -
Acco02g0304 547 ProSiteProfiles Saposin B type domain profile. 417 458 IPR008139 -
Acco02g0304 547 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 57 545 IPR001461 GO:0004190|GO:0006508
Acco02g0304 547 Gene3D Acid Proteases 67 281 IPR021109 -
Acco02g0304 547 FunFam Lysosomal aspartic protease 109 351 - -
Acco02g0304 547 Pfam Eukaryotic aspartyl protease 122 546 IPR033121 -
Acco02g0304 547 FunFam Lysosomal aspartic protease 395 546 - -
Acco02g0304 547 SUPERFAMILY Saposin 354 456 IPR011001 -
Acco02g0304 547 SUPERFAMILY Acid proteases 46 546 IPR021109 -
Acco02g0304 547 PRINTS Pepsin (A1) aspartic protease family signature 275 288 IPR001461 GO:0004190|GO:0006508
Acco02g0304 547 PRINTS Pepsin (A1) aspartic protease family signature 325 336 IPR001461 GO:0004190|GO:0006508
Acco02g0304 547 PRINTS Pepsin (A1) aspartic protease family signature 520 535 IPR001461 GO:0004190|GO:0006508
Acco02g0304 547 PRINTS Pepsin (A1) aspartic protease family signature 129 149 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0304 Acco-ChrAcco02 2232154 2238081 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0304 02 2232154 2238081 Acco02g0304 02 2232154 2238081 ECH