Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3290 ATGAGCAAAGCCAAGGACGAAGCAGACGAAGAAGAACGCTTCTACGAATCTAATGACCATCTAGTTTCGTCCTCTTGCTCCTGCTCCACTTCCAACTCCGATGACGACGAAAAAGACAATGGCTCCAGTCCCAACTCTCCCAATTATGGTTCCGACCAACCCTTCCCCGTACCCAGATTCCCGGCGGCCTTGTGCAAGTACGATGTTTGGATCTCTGAACCGTCGTCGGTGTCTGAACGCCGGACCCGTCTTCTTCGAGAGATGGGTCTCGCCGGCGACCCGTCATTGTCCCGGGGAAAGGCTGCTTCTGCCGATTATCTTAGAGAAATGGCCAATGGAGAGTTTGGCCGATCGGCTTCTACCGATCACTTGAGTCGCCAACAACAGGGTGAAACTTCTGGTTGCACCGCCGGCATATCCCGATCGAAATCAGACGGTGGAGCGGATCTCGGCGACTTGCAGGTGTGTCCTGGTCAGTCTCGTCGTCGTCATAATAAGTCTACTTCTTTGGTCTGTTCTTCAATTCTTTCTGCTCACTCGGTCGCTTCAGATAACGGCTCATTTGTGAATAGCCGTAATCAAGTCATTAAGTCGAGGTGCGGCAATGGCAAGGGATCCCCGATTGCTAATGCTGCCTTCCCCAATAAGCCGCCTTCAGGGAAAAATGTCCGAACGTTAGATGAAATCCGAAGTGGCTCCTCGAACTTGAGTGTGGATTTCGGCCATTTATCGGTGGAACCAGTTTTGGAGAATGCAGTGGGTGGGGAAGGGGAGGAGGGTGCGAACTGTAATGGACTTGACAGGGCTGATGAACAAGTGTGCACCATTAGAGATCTTGATAATGGGAAAGAATTTGTAGTCAAGGAGATTAAGGAAGACGGTACGTGGAACAAATTAAAGGAAGTGGGAACTGGAAGGCAGTTGACCTTGGAGGAGTTTGAGATGACAGTGGGACACTCACCAATTGTTCAAGAATTGATGAGACGACAAAATTTCGAGGAGGGTAACAGCAATGTAGATTCAAATGCAAATATAACTGCCAGTGGCGGTAGTGGAGGTGGTGCCAAGGTAAAGAAGAAAGGGGGTTGGTTTAAGAGTATAAAGAGTGTTGCCAGCACCATGGCGGGTTATAAGGACAGACGGAGTAGTGATGAAAGGGATACCTCGTCAGAAAGGGGTGGGCGGAGGTCAAGTTCTGCTACAGATGAAAGCCAAGATGCGTATTTACATGGACCTGAAAGAGTACGGGTTAGGCAGTATGGAAAATCATGTAAAGAGGTTACTGCACTCTATAAGAGCCAGGAGGTACAGGCTCATAATGGATCTATATGGAGCATTAAGTTTAGTTTGGATGGGAAATATCTTGCCAGTGCAGGTGAGGATCGTGTAATTCATGTGTGGCAAGTTGTGGAGTCAGAGAGGAAGGCGGAGCTGCTAATGGAGAAACCAGGCTATGGGAGTATGAATAAGTTATTGGTTATGAATGGATACACTGAACCAGCCTTGTTATCCCCTAGCCATCTGGAGACGAAGAGAAGGGGGAGGTCATCCATCAGAAGAAAATCATTGAGCTTTGACCAGTTAGTTGTGCCAGAAACTATGTTTGCACTAACTGAAAAACCCATTTGCACATTCCAAGGTCATCTTGATGATGTGCTTGATCTATCGTGGTCCAAATCTCAGCACTTGCTTTCCTCTTCAATGGATAAAACGGTGCGGCTGTGGCATTTATCAAGCAAGTCTTGTTTGAAAGTTTTTAAACACAGTGACTATGTGACTTGCATCCAGTTTAATCCCATTGATGATAGATACTTCATTAGCGGGTCTTTGGATTCTAAGGTTCGCATATGGAGTGTTCCTGATCATCAAGTTGTTGATTGGATTGATTTGCATGAGATGGTCACTGCTGCTTGCTACACACCTGATGGTCAGGCTGCACTGATAGGTTCATATAAGGGCAGCTGCCATTTGTATAGTACATCTGAAAATAAATTGCAACAGAAGAGTGAGATTATGCTGCAGAACAAGAAAAAGAAGTCAAATCTCAAGAAAATTACTGGTTTCCAGTTTGCTCCAGGAAGTTCATCAGAATTACTCATAACATCTGCTGATTCTCGAATTCGATTGGTTGATGGTGTTGATCTGGTTCATAAGTTCAAAGGGTTTCGCAACACAAATAGCCAAATTTTAGCCTCGTTCACAGCAAATGGAAAATATATAGTCTCAGCAAGTGAGGATTCCCATGTGTATGTGTGGAAAAATGAAGCTAATTGCAGGCCCAACAGAACCAAAGGTGTCACTGTCACTCAGTCATATGAACATTTTCATTGTAGAGATGTGTCGGTGGCTATTCCTTGGCCTGGTATGGGTGATGCATGGGAAATGCAAGATCCTTTGTCTGGAGAACAAACTGGGGCTGATTGTGTCCCTGACGAGGCCTCATCGGCGAATCATCCCCCAACCCCAGTAGATGAATGTTTTGGTAATGAGGGATTAGGGGCCAACAATGGCTCACTCCATGGAACTATAGCTGGCGCGACGAACAGTTATTTTTTTGACAGAATATCCGCAACATGGCCAGAGGAAAAACTTGTTCTTGCTGCCAGGAGACGAAGCCCTAGAGTTAGTGTGGATATCTCCGACGGGGTTCATCAAAACATGTCAGCCTGGGGACTCGTGATGGTAACTGCTGGCCTTCGAGGGGAAATCCGAGCTTTTCAAAACTTTGGATTGCCAATGCGGATTTAA 2748 0.4636 MSKAKDEADEEERFYESNDHLVSSSCSCSTSNSDDDEKDNGSSPNSPNYGSDQPFPVPRFPAALCKYDVWISEPSSVSERRTRLLREMGLAGDPSLSRGKAASADYLREMANGEFGRSASTDHLSRQQQGETSGCTAGISRSKSDGGADLGDLQVCPGQSRRRHNKSTSLVCSSILSAHSVASDNGSFVNSRNQVIKSRCGNGKGSPIANAAFPNKPPSGKNVRTLDEIRSGSSNLSVDFGHLSVEPVLENAVGGEGEEGANCNGLDRADEQVCTIRDLDNGKEFVVKEIKEDGTWNKLKEVGTGRQLTLEEFEMTVGHSPIVQELMRRQNFEEGNSNVDSNANITASGGSGGGAKVKKKGGWFKSIKSVASTMAGYKDRRSSDERDTSSERGGRRSSSATDESQDAYLHGPERVRVRQYGKSCKEVTALYKSQEVQAHNGSIWSIKFSLDGKYLASAGEDRVIHVWQVVESERKAELLMEKPGYGSMNKLLVMNGYTEPALLSPSHLETKRRGRSSIRRKSLSFDQLVVPETMFALTEKPICTFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKVFKHSDYVTCIQFNPIDDRYFISGSLDSKVRIWSVPDHQVVDWIDLHEMVTAACYTPDGQAALIGSYKGSCHLYSTSENKLQQKSEIMLQNKKKKSNLKKITGFQFAPGSSSELLITSADSRIRLVDGVDLVHKFKGFRNTNSQILASFTANGKYIVSASEDSHVYVWKNEANCRPNRTKGVTVTQSYEHFHCRDVSVAIPWPGMGDAWEMQDPLSGEQTGADCVPDEASSANHPPTPVDECFGNEGLGANNGSLHGTIAGATNSYFFDRISATWPEEKLVLAARRRSPRVSVDISDGVHQNMSAWGLVMVTAGLRGEIRAFQNFGLPMRI 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3290 915 Gene3D - 422 778 IPR015943 GO:0005515
Acco01g3290 915 MobiDBLite consensus disorder prediction 117 150 - -
Acco01g3290 915 PRINTS G protein beta WD-40 repeat signature 455 469 IPR020472 -
Acco01g3290 915 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Acco01g3290 915 PRINTS G protein beta WD-40 repeat signature 605 619 IPR020472 -
Acco01g3290 915 Pfam WD domain, G-beta repeat 540 575 IPR001680 GO:0005515
Acco01g3290 915 Pfam WD domain, G-beta repeat 435 467 IPR001680 GO:0005515
Acco01g3290 915 Pfam WD domain, G-beta repeat 732 753 IPR001680 GO:0005515
Acco01g3290 915 Pfam WD domain, G-beta repeat 581 618 IPR001680 GO:0005515
Acco01g3290 915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 436 469 - -
Acco01g3290 915 PANTHER WD REPEAT DOMAIN 44 6 912 IPR040324 -
Acco01g3290 915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 579 - -
Acco01g3290 915 MobiDBLite consensus disorder prediction 118 140 - -
Acco01g3290 915 FunFam WD repeat-containing protein 44 526 792 - -
Acco01g3290 915 SUPERFAMILY WD40 repeat-like 432 755 IPR036322 GO:0005515
Acco01g3290 915 SMART WD40_4 579 618 IPR001680 GO:0005515
Acco01g3290 915 SMART WD40_4 538 576 IPR001680 GO:0005515
Acco01g3290 915 SMART WD40_4 675 711 IPR001680 GO:0005515
Acco01g3290 915 SMART WD40_4 621 659 IPR001680 GO:0005515
Acco01g3290 915 SMART WD40_4 429 468 IPR001680 GO:0005515
Acco01g3290 915 SMART WD40_4 712 753 IPR001680 GO:0005515
Acco01g3290 915 MobiDBLite consensus disorder prediction 334 359 - -
Acco01g3290 915 MobiDBLite consensus disorder prediction 334 349 - -
Acco01g3290 915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 585 619 - -
Acco01g3290 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 619 IPR001680 GO:0005515
Acco01g3290 915 MobiDBLite consensus disorder prediction 375 412 - -
Acco01g3290 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 732 753 IPR001680 GO:0005515
Acco01g3290 915 MobiDBLite consensus disorder prediction 1 18 - -
Acco01g3290 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 585 IPR001680 GO:0005515
Acco01g3290 915 MobiDBLite consensus disorder prediction 1 55 - -
Acco01g3290 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 436 477 IPR001680 GO:0005515
Acco01g3290 915 MobiDBLite consensus disorder prediction 378 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3290 Acco-ChrAcco01 50096463 50101598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3290 431 632 Miscellaneous Gene Families AT5G08390 22.791 2.81e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3290 01 50096463 50101598 Acco01g3290 01 50096463 50101598 ECH