Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3272 ATGTGCGTAGCCAGCCTTGAGACTCAGAGAACTGAGAACGCAACCGAGCGAGACCTGATCGACGTACTTTTATACAGCCTGGTTGAATTCCGAACTGGAGGCCATTCGTCTAACACGTCTTCCTTCTGTGCAATCATTTTCGCTATCGTTTCAGTAACTAACTTAGGTTCGTACTTCTCTCACTGTGCACTGGTGTTCTATCCCGGTGCCGTGGTTGTTGAGGTTGCTGGGTTCGAGATGGTTCAAGGCCCCTGGAAAAAGGTGCTGAAGGAGAGAGAGAGAATTGTTTTGCGTGGAAAGGAAAATGAACATTTAGAGAAGAATCCTGAAATAGCCAACTCCATAAAATTTGGATCACTTGAAGGCGAACCTACTAAAGAAGGGAATGAAATTTTAGACTTTAGTGTACTAAACGAAGATTGGCCACCTCTCAAGCAGATACATTCTTTTTATTTTGTTAAGTTTCGGCCTTATGAAGATCCTAACATAAAGTCTGGAGTTGATCAGCTTGATATAGAGATTAGCATGCAAAATAAGACCCGGTCTAAGCTTACTGAAGCTATAGAAGAAAGGTTCGAGATGGTTCAAGACCCCTTGGAAAAAGGCGCTGAAGGACAGAAAGTTGTTTTGCTTGAAAAGGAAAATGGACATTTAGAGAAGGATCCTGAAGTAGCTAAATCCATAAAATTTGGATCACTTGAAGACAAACCTACTAAAGAAGGGAGTAAAATGTTAGACTTTAGTGCACGAAACAAAGATTTTGTTAAGTTTCAGCCTTATGAAGATCCTAACATAAAGTCCGGAGTTAATAAGCTTGATATAGAGATTAGCATGCAAAATAAGACCCAGTTTGAGCTTACTGAAGCTATAAAAGCAAGGTTCGAGATGGTTCAAGACACCTTGGAAAAAGGTGCTGAAGGAGAGAAAGCTGTTTTTCCTGGAAAGGAAAACGGGTATTTAGAGAAGGATCCTGAAGTAGCTGAATCCATAAAATTTGGATCACTTGAAGACAAACCTACTAAAGAAGGGAGTGAAATTTTAGACTCTAGTGCACGAAACGAAGATTTTGTTAAGTTTCGGTCTTATGAAGATCCTAACATAAAGTCCAGAGTTGATCAACTTGATATAGAGATTAGCTTGCAAGATAAGACCCGGTTTGAGCTTACTGAAGCTATAAAAGCAAGGTTCGAGATGGTTCAAGATCCCCTGGAAAAAGGTGCTGAAGGAGAGAAAGTTGTTTTGCCTGGAAATAAAAATGGACATTTAGAAAAGGATCCTGCTGAATTCATAAAATTTGGATTACTTGAAAACGAACCTAATAAAGAAGGGAGTGAAATTTTAGACTCCAGTGCACGAAATGAAGATTGGCCAGCTCCTAAGCAGATACATTCTTTTTATTTTGTTAAGTTTTGGCCTTATGAAGATCCTAACATAAAGTCCAGAGTTGATCAGCTTGATAGAGAGATTAGCATGCAAAATAAGACTCAATTTGAGCTTACTGAAGCTATAAAAGCAAAGCGGTCAGATCGAGCGGAGTTGATTTCTCAGATTAAGGCTCTGAGAGATCAAAATAGACAATTTCAGTATATATTGGATGAAAAAAGAAAAGAGATTGAACCTCTGACACAGGCTTTGGGCAAGTTGCGTACACCAAACAGTTCAGGTTGGGGTGGTTTATGCTCATCTGAGAAGGAACTGAACGATATTGTGGGTTTTCTGTCTCAAATTTATAGTTTGCAATACCGGATACAACATGAGACCATTCCATTATCTGAGGAAAAACAACTCCTTCATGAAATCAAACAGCTTGAGGGGACAAGGGAGAAAGTTATTGCAAATGCTTCCATGAAGGCCAAATTACAGGATTCGCTTGGGCAGAAAGAAGCCATTCAAGATCAGGTTAAGCTTATAGGTGGGGATTTGGATGGAGTAAAGAAGGAGAGAGAGATAGTTCGGTCCAAAATCATGGAAGTTGATCATTCTCTGAAGGTCTTAGATATGGATATTCAGTCTTTACAGGACAAACTAACAGGTCTCATTCAGAAGAAGGATAAAGCTTATGAGAGCATTCTGCAGCTGAGAAAACAACGTAATGAAGGGAATTCCTGTTTCTACCAAAGCCGTGCTCTTTTGAATAAAGCGAGGGAGCTTGCTGCAAAGAAAGATGTTAAAGCTCTTGAGGAACTTTCACAAGCAGAGGTTGAGAAATTTATGTCACTCTGGAGCAGTGACATTGCTTTCAGGAATGACTATGAGAGAAGAATTTTGCCTTCATTGGATAATCGACAACTGAGTAGGGATGGACGGATTAGAAATTCAGATGAAAAGCCATTGATGGAAGAGTCAAAACCTGATGAAACTCATATAATGCCGAAGATCAGCAAAAGTCAGTTGAAGGAAGAGCCCGAGTCTTCTCCAAAAGATAGTTTGCCCAGTCAGAAGCTTCAGAATGAAGCCAAAAACAAAGAGAGAGATTTGAAATCTCATCTAGAAAATAAAGAATTAGCAGAGGTTGATAAATTGGAATTTGAAAAGCCAAAAAAGGAGAATGTTGTTAAAGAGCCTGAAATTGATCCAGCAAAGTTGAAGGAGATGAAGAGAGAGGAGCAAATTGCAAAAATGAAGCTGGCCTTGGAAAGGAAGGCCAAGTTAGCAAGGAAAGCTGCAGCCAAGGCAGCTGTCCGAGCACAAAAGGAAGCCGAGAAGAAGCTTAAAGAGCGTGAAAAGAAAGCTGAAAAGAAAGCTAAGAAGGCGGCTGCCGCCTCTGCTCCTGATCCCAATCCCGAGGAACAACCAGCGAATGTTGCAGTGGAGGCTACAGAACCAGAAAAGTTAGATGAAAATGATGATGCCCCCGTGGCAGTGAAGGAAAAGGTCCAGAAAGAGAGTAGTGTCAGGTCCAGGGGTGGAAACAAAGGTCGTGCCTCGGTTCCAAAAGTTGTTTTGAAGAAGAAAAGATCTCAGAATTACTGGCTGTGGGCTGCATCTGCTGCTTTGTTACTGTTGCTCTTGGACTGTAGGTGCTGTCGTGTTGGGAAAGCGCCCCTAGCCATGGCTGCCACTTGCTTTGGAATGCCCCGGTGTCTGAGCAACGCAGCTCAGGCTCTTGCTTTCTCTACTCTTCTTCGTTGCAACGCTGAACTCTCTTTTCGGAGGAGCATTTCTTCTGACCTGTTCGCCGTTTCTTGTCCTTCAGGTGTAAGCCAGAGAGTACAAGCTTTAAAGGGACAGGAAGGTGAGGTGCTGCTCAGGGGAGTAAAAGAGAAAAGCACAATAAAAGAAGTGAAGCATATTCTTGAGATGGCTCAAAGGGCATCATCAAGACGAGAAGTTCTTCATACAAATTTCCTTACCCCTCCAGTGCTGAAGGAATCTATGGAAGTAGTGGGAAAATTATCCGGTGTGAAAGCAATTGCTCAAGGAGGCTACCCACAGGCTGAACGCTGCCGGATTTCTGTTGGACATCTAGAGGAATTGACAAGTGACCCGGATATAATTGCAGCATTGAGCATTACTGGAAACTTTCAGTTTGAACCTTGTTCTCATGGCGACTTCCTTGGTGCAATCCTTGGTACTGGAATCACCAGGGAGAAACTTGGAGATATAATGTTGCAGGGCGAACAGGGTGCTCAGATACTTATTGTTCCAGAACTTGTTGATCATGTCATATCATCACTGGGTAAGGTTGGTAATGTTCCTGTGTCTTGCAGCAAGATACCATTAATTTCTCTTGATTATGAACCACCAAGAACCAAGTCATTTAAAACCATAGAAGCATCCTTAAGAGTTGATGCGGTAGCAAGTGCTGGGTTCAAAATTTCACGTTCAAAGCTAGTTGACCTGATCAGCGATGGGGCTGTTCGTGTTAACTGGATCCCTGTCACTACCAAAGGAGCCACGCTCAAGAGTGGAGATATGGTATCTGTCAGTGGAAGGGGAAGATTAAAGATAGGAGAAGTAAACTCAACAAAGAAAGGGAAGTTTGCAGTGGAGTTGATTCGGTATTTGTAA 4011 0.4188 MCVASLETQRTENATERDLIDVLLYSLVEFRTGGHSSNTSSFCAIIFAIVSVTNLGSYFSHCALVFYPGAVVVEVAGFEMVQGPWKKVLKERERIVLRGKENEHLEKNPEIANSIKFGSLEGEPTKEGNEILDFSVLNEDWPPLKQIHSFYFVKFRPYEDPNIKSGVDQLDIEISMQNKTRSKLTEAIEERFEMVQDPLEKGAEGQKVVLLEKENGHLEKDPEVAKSIKFGSLEDKPTKEGSKMLDFSARNKDFVKFQPYEDPNIKSGVNKLDIEISMQNKTQFELTEAIKARFEMVQDTLEKGAEGEKAVFPGKENGYLEKDPEVAESIKFGSLEDKPTKEGSEILDSSARNEDFVKFRSYEDPNIKSRVDQLDIEISLQDKTRFELTEAIKARFEMVQDPLEKGAEGEKVVLPGNKNGHLEKDPAEFIKFGLLENEPNKEGSEILDSSARNEDWPAPKQIHSFYFVKFWPYEDPNIKSRVDQLDREISMQNKTQFELTEAIKAKRSDRAELISQIKALRDQNRQFQYILDEKRKEIEPLTQALGKLRTPNSSGWGGLCSSEKELNDIVGFLSQIYSLQYRIQHETIPLSEEKQLLHEIKQLEGTREKVIANASMKAKLQDSLGQKEAIQDQVKLIGGDLDGVKKEREIVRSKIMEVDHSLKVLDMDIQSLQDKLTGLIQKKDKAYESILQLRKQRNEGNSCFYQSRALLNKARELAAKKDVKALEELSQAEVEKFMSLWSSDIAFRNDYERRILPSLDNRQLSRDGRIRNSDEKPLMEESKPDETHIMPKISKSQLKEEPESSPKDSLPSQKLQNEAKNKERDLKSHLENKELAEVDKLEFEKPKKENVVKEPEIDPAKLKEMKREEQIAKMKLALERKAKLARKAAAKAAVRAQKEAEKKLKEREKKAEKKAKKAAAASAPDPNPEEQPANVAVEATEPEKLDENDDAPVAVKEKVQKESSVRSRGGNKGRASVPKVVLKKKRSQNYWLWAASAALLLLLLDCRCCRVGKAPLAMAATCFGMPRCLSNAAQALAFSTLLRCNAELSFRRSISSDLFAVSCPSGVSQRVQALKGQEGEVLLRGVKEKSTIKEVKHILEMAQRASSRREVLHTNFLTPPVLKESMEVVGKLSGVKAIAQGGYPQAERCRISVGHLEELTSDPDIIAALSITGNFQFEPCSHGDFLGAILGTGITREKLGDIMLQGEQGAQILIVPELVDHVISSLGKVGNVPVSCSKIPLISLDYEPPRTKSFKTIEASLRVDAVASAGFKISRSKLVDLISDGAVRVNWIPVTTKGATLKSGDMVSVSGRGRLKIGEVNSTKKGKFAVELIRYL 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3272 1336 CDD S4 1262 1316 - -
Acco01g3272 1336 MobiDBLite consensus disorder prediction 817 838 - -
Acco01g3272 1336 Pfam S4 domain 1262 1307 IPR002942 GO:0003723
Acco01g3272 1336 Pfam Putative RNA-binding domain in YlmH 1167 1241 IPR040591 -
Acco01g3272 1336 Gene3D - 1162 1244 IPR012677 -
Acco01g3272 1336 NCBIfam photosystem II S4 domain protein 1090 1334 IPR017506 -
Acco01g3272 1336 Coils Coil 812 839 - -
Acco01g3272 1336 MobiDBLite consensus disorder prediction 895 919 - -
Acco01g3272 1336 SUPERFAMILY Alpha-L RNA-binding motif 1122 1324 - -
Acco01g3272 1336 Coils Coil 887 921 - -
Acco01g3272 1336 MobiDBLite consensus disorder prediction 766 807 - -
Acco01g3272 1336 MobiDBLite consensus disorder prediction 940 968 - -
Acco01g3272 1336 Coils Coil 662 682 - -
Acco01g3272 1336 MobiDBLite consensus disorder prediction 766 838 - -
Acco01g3272 1336 MobiDBLite consensus disorder prediction 895 977 - -
Acco01g3272 1336 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 399 994 - -
Acco01g3272 1336 Coils Coil 503 537 - -
Acco01g3272 1336 ProSiteProfiles S4 RNA-binding domain profile. 1261 1321 - -
Acco01g3272 1336 Gene3D - 1087 1154 - -
Acco01g3272 1336 SMART s4_6 1261 1323 IPR002942 GO:0003723
Acco01g3272 1336 Gene3D - 1256 1312 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3272 Acco-ChrAcco01 49942457 49954340 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3272 01 49942457 49954340 Acco01g3272 01 49942457 49954340 ECH