LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g3232	ATGAGAAACATTTCAAAACCAGCATGCTTCATCTTCATTCTTGTTCTTCTACCAGCACTTCTTGAGGTTGAAGGTCGTTTTCTGCGAAACAGTTTTTCTTCTTCTTCTGCATTGTTGACTTCAGATGGATTTGACGAAGTTGATAGTGTTCAACCCCAGAAGAATTCTCACTTGTTTATCTGGGGGAATACCAGAAAAACCGAACAGTCTGAAGAAGAGTGTGAGCAAATGTACGGCTTCTTGCCCTGTTCAACTACCATGTTTGGCCATCTCTTTCTGATTCTGGTTTATGAGTTCTTGTTGTTCCATGGAGAGTCATACTTGGCTTCTGGGGGCGAGCAGGTCTTCAAGATTCTTGGCCCTGGCCTTTTTGGTGCAAGTGCCTTTGATCTTCTTGGTGCCCTTCCTGAGTCTTTGATTCTTCTTGTTACTGGGCTTTCCAGAGAGACTAAGGAGAGTGCACAAGAGTATGCTTCCACTGGAGTAGGCATGTTGGCTGGATCATCCATCATGCTCCTCACAATAGTTTGGGGAACCTGTGTCATCACTGGCAGGCAAAACTTGAAAACTGACTCAAGGCATAAATCCTATCACTATTCTAATCCACCAGCTTCAACTCCTGCAGACTTATTATCTGGTTTCGGGATTACTGTGGATAACGAGACAAAGGAAATGGCAAGAATCATGGTTCTCTCAGTTATGCCACTCCTAATTATGCAGATTCCCAGTGTGTTTCGGTTCTCTTCAGTGCTTCGCTCTGTGACCTTGATGGTTGCTCTTATTGTTACTGTCATTTTTGTCTTCTCCTACTTCATTTATCAGATATTCAAACCTCATATAGAAAAAACAAGGCTAGAATACATAAAGCATCATGATTTAATATTGAGAATTTTCGAGCATGTTGAAAAGCAAACCCTTCAAAAGATCCTCACTGAGGATGGATCTCCCAATGTTGCAGCCATTAATGGGTTATATAATGAAATTAGTCAGCACGGTGGAGAAAGGGATTTATTAGCTTCTGAAGTGAAAGAACTGCTGCTCAAGAACAAACTAAATGGGGCAAACATCTCAGAGGAACAAGTTGAAGACATGTTAAGAATGTTTGATCGAAATAATGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGATTAACACAATGGATTGAGCAAACCAAGCATGCTTTGGATAGACAATACATGCCAAGAAAGTCACTCCAGAACATTTATCAGGGTTTTCTGAAGCCATGGTTGGAACACACAAGAAAAGAGCGTGAGATGAAGGGACATCTTATATCTGAAATCTTAACGCATGCTCAGAACGATATAGCTGGGGGGATTCTCAATGATGATGGAACGGCGAATGAGTCTGCTATAAGAAGGTTGTTTGAGGAAGTTGATAGCAATGGAGACAACTGTGTTTCTCAATCCGAGTTAAGGAAACTAGTGACAAGCCTCCACATGGGTAAGGCAGTGGATGAGGAGGAAGCAGTCAAGAAAATAATTCAAGATTTTGATATAAACAGTGACAATATGATTAATGAGGAAGAATTTGTGGATGGATTCACAAAATGGCTACTTTCATCTTCCAGACAAGCTCCACACTCAAAAACTCTGCCTCATGAAGAAGAAACCCATCAAACCTGGGAATATGTGGAGAAGGTTGTGGAAGAGAAGCATCAGCACAAAGGAATATATGGATGGATCATAGCTATAATGAATGTGGTGCTAGGAATCGCTATATTATCAATTCTTGCAGAGCCACTTATAGCAAGTGTTCAGAAATTTTCTGAAGAAGCAGGAATCCCATCTTTCTTTGCTTCATTCATTTTAGTCCCTCTGGCTACAAATTTTAGAGAAGCAACCTCGGCCATCAAAGAAGCTAGCCACAAGAAGAGAAGTAACACTTCTCATACAATCTATGAGATTTATGGAGCCGTATTTATGAACAACATTCTTGGATTTGCTGCAATTGCGACTCTGATATATGTGAGACAAATATCGTGGAAATTTTCAGCTGAAGTGCTGGTTGTGGCAATAGTTTGTTCTGTAATGGGCCTGTCTGCAACCTTTCGGCCCAATTTTCCTCTGTGGACATCCTTCGGAGCTTACCTTTTATATTTGCTGTCTTTAGTTTTGGTTTATGTTCTCAATGATGTTCTTCACTATGAGTGA	2175	0.4064	MRNISKPACFIFILVLLPALLEVEGRFLRNSFSSSSALLTSDGFDEVDSVQPQKNSHLFIWGNTRKTEQSEEECEQMYGFLPCSTTMFGHLFLILVYEFLLFHGESYLASGGEQVFKILGPGLFGASAFDLLGALPESLILLVTGLSRETKESAQEYASTGVGMLAGSSIMLLTIVWGTCVITGRQNLKTDSRHKSYHYSNPPASTPADLLSGFGITVDNETKEMARIMVLSVMPLLIMQIPSVFRFSSVLRSVTLMVALIVTVIFVFSYFIYQIFKPHIEKTRLEYIKHHDLILRIFEHVEKQTLQKILTEDGSPNVAAINGLYNEISQHGGERDLLASEVKELLLKNKLNGANISEEQVEDMLRMFDRNNDQIITKEEFVTGLTQWIEQTKHALDRQYMPRKSLQNIYQGFLKPWLEHTRKEREMKGHLISEILTHAQNDIAGGILNDDGTANESAIRRLFEEVDSNGDNCVSQSELRKLVTSLHMGKAVDEEEAVKKIIQDFDINSDNMINEEEFVDGFTKWLLSSSRQAPHSKTLPHEEETHQTWEYVEKVVEEKHQHKGIYGWIIAIMNVVLGIAILSILAEPLIASVQKFSEEAGIPSFFASFILVPLATNFREATSAIKEASHKKRSNTSHTIYEIYGAVFMNNILGFAAIATLIYVRQISWKFSAEVLVVAIVCSVMGLSATFRPNFPLWTSFGAYLLYLLSLVLVYVLNDVLHYE	724

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g3232	724	ProSitePatterns	EF-hand calcium-binding domain.	369	381	IPR018247	-
	Acco01g3232	724	PANTHER	VACUOLAR CALCIUM ION TRANSPORTER	73	716	IPR004713	GO:0006812\|GO:0008324\|GO:0016020
	Acco01g3232	724	ProSiteProfiles	EF-hand calcium-binding domain profile.	356	391	IPR002048	GO:0005509
	Acco01g3232	724	Pfam	EF-hand domain pair	352	385	IPR002048	GO:0005509
	Acco01g3232	724	SUPERFAMILY	EF-hand	343	526	IPR011992	-
	Acco01g3232	724	ProSitePatterns	EF-hand calcium-binding domain.	506	518	IPR018247	-
	Acco01g3232	724	Gene3D	-	395	537	-	-
	Acco01g3232	724	Pfam	EF-hand domain pair	457	520	IPR002048	GO:0005509
	Acco01g3232	724	ProSiteProfiles	EF-hand calcium-binding domain profile.	454	489	IPR002048	GO:0005509
	Acco01g3232	724	Gene3D	-	315	394	-	-
	Acco01g3232	724	CDD	EFh	459	523	IPR002048	GO:0005509
	Acco01g3232	724	Pfam	Sodium/calcium exchanger protein	575	715	IPR004837	GO:0016020\|GO:0055085
	Acco01g3232	724	ProSitePatterns	EF-hand calcium-binding domain.	467	479	IPR018247	-
	Acco01g3232	724	ProSiteProfiles	EF-hand calcium-binding domain profile.	493	528	IPR002048	GO:0005509
	Acco01g3232	724	SMART	efh_1	458	486	IPR002048	GO:0005509
	Acco01g3232	724	SMART	efh_1	360	388	IPR002048	GO:0005509
	Acco01g3232	724	SMART	efh_1	497	525	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g3232	Acco-ChrAcco01	49673497	49677806	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g3232	409	718	EF-hand Containing Proteins	AT1G53210	40.060	8.86e-62	215

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco01g3232	01	49673497	49677806	Acco01g3232	01	49673497	49677806	ECH