Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3171 ATGGTGAACAAAACCAGCAACCCACCGACCCTCATGATCTCTAATGGCTCCCCCACATCCCGCCAATGCCATTTTAAGTTGCTTGAAATGGCAGCATATACCCCAAAGAATATCCTCATCACTGGGGCAGCCGGATTTATTGCATCTCATGTTGCCAATCGGCTCATCCGGAGCTACCCTGCCTACAAAATTGTTGTTCTCGACAAACTTGATTACTGTTCAAATTCGAAGAACCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGACATTGCAAGCGCCGACCTTGTCAACTACCTTCTTATCACTGAGTCCATAGACACAATAATGCACTTTGCTGCTCAGACCCATGTGGACAACTCGTTTGGTAATAGCTTTGAATTCACCAAGAACAACATATATGGTACTCACGTCCTGTTAGAAGCCTGCAAGGTCACTGGTCAGATCAGAAGGTTCATTCATGTGAGCACTGATGAGGTCTATGGGGAGACAGATGAGGATGCTGTTGTTGGAAATCACGAGGCTTCCCAACTTCTTCCCACAAATCCATACTCTGCCACGAAAGCTGGTGCAGAAATGCTGGTCATGGCATATGGTAGGTCATATGGGTTGCCTGTGATCACAACTCGTGGAAATAATGTCTATGGGCCCAATCAGTTTCCTGAGAAGCTAATTCCAAAGTTCATCCTCTTAGCTATGCAAGGCAAGCCTCTTCCAATTCACGGAGATGGTTCGAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAGGTTATACTCCACAAAGGAGAGGTTGGTCATGTCTACAATATTGGAACAACGAGAGAAAGGAGAGTTATTGATGTAGCCAAAGATATATGCGGACTTTTCTCAATGGACCCTGATTCTAGTATAAAATTTGTGGACAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATCAAAAGTTGAAGAACTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGACTGAAGAAAACCATAGAGTGGTATACCAAGAATCCTGCTTGGTGGGGTGATGTCAGCGGGGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCGGGTGGGATGGAGAGACATTTTGATGGCTCTGAAGAAGATATGCCCACATCCTTTGCTTCCAACAATACTCGGGTGGTGGTTCCATCATCTAAGAACACTAGCACTCAGCAGAAACATGCTTATAAGTTCTTGATCTATGGTAGAACAGGGTGGATCGGGGGTCAGTTAGGGAAACTCTGTGAAAAACAAGGGATTCCATTTGAATATGGAAAAGGACGCTTAGAGGATCGCTCATCACTCATGGCAGATATCCAAACTGTGAAGCCTACACATGTTTTCAATGCTGCTGGAGTGACTGGCCGACCTAACGTTGACTGGTGTGAATCTCATAAAACAGAAACCATTCGCACCAACGTTGCTGGTACTTTAACACTGGCAGATGTTTGCAGAGAACAAGGGCTCTTGATGGTGAATTATGCCACTGGGTGTATATTTGAGTATGATGCAGCACATCCAGAGGGTTCCGGCATTGGTTTTAAGGAGGAAGACATACCCAACTTCACTGGTTCTTTCTATTCCAAAACTAAAGCTATGGTCGAAGAGCTTTTGAAAGAATATGGCAATGTGTGCACTCTGAGGGTTCGCATGCCAATTTCATCTGATCTGAGTAACCCCCGCAACTTCATCACAAAGATCACTCGTTATAGCAAAGTGGTCAACATTCCAAACAGCATGACTATCTTGGATGAACTTTTGCCGATTTCAATCGAAATGGCAAAGCGAAACTTGCATGGCATCTGGAACTTCACAAATCCTGGGGCCGTGAGCCACAATGAGATCCTTGAGATGTACAAGGATTATGTTGATCCCAACTTCAAGTGGGTTAACTTCACTCTTGAAGAGCAAGCCAAGGTGATAATTGCTCCAAGAAGCAACAATGAGATGGATGCATCCAAGTTGAAGAAAGAGTTTCCAGAGTTGCTTTCCATCAAGGAATCACTGATCAAATACGTCTTTGAACCAAACAGGAAAACCCATACAAAATAA 2103 0.4417 MVNKTSNPPTLMISNGSPTSRQCHFKLLEMAAYTPKNILITGAAGFIASHVANRLIRSYPAYKIVVLDKLDYCSNSKNLIPSKSSPNFKFVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTTRERRVIDVAKDICGLFSMDPDSSIKFVDNRPFNDQRYFLDDQKLKNLGWSERTTWEEGLKKTIEWYTKNPAWWGDVSGALLPHPRMLMMPGGMERHFDGSEEDMPTSFASNNTRVVVPSSKNTSTQQKHAYKFLIYGRTGWIGGQLGKLCEKQGIPFEYGKGRLEDRSSLMADIQTVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREQGLLMVNYATGCIFEYDAAHPEGSGIGFKEEDIPNFTGSFYSKTKAMVEELLKEYGNVCTLRVRMPISSDLSNPRNFITKITRYSKVVNIPNSMTILDELLPISIEMAKRNLHGIWNFTNPGAVSHNEILEMYKDYVDPNFKWVNFTLEEQAKVIIAPRSNNEMDASKLKKEFPELLSIKESLIKYVFEPNRKTHTK 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3171 700 Pfam RmlD substrate binding domain 414 585 IPR029903 -
Acco01g3171 700 Pfam GDP-mannose 4,6 dehydratase 39 344 IPR016040 -
Acco01g3171 700 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 361 IPR036291 -
Acco01g3171 700 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 409 688 IPR036291 -
Acco01g3171 700 FunFam UDP-glucose 4,6-dehydratase 38 238 - -
Acco01g3171 700 CDD dTDP_GD_SDR_e 36 352 IPR005888 GO:0008460|GO:0009225
Acco01g3171 700 Gene3D - 38 342 - -
Acco01g3171 700 Gene3D - 229 351 - -
Acco01g3171 700 CDD dTDP_HR_like_SDR_e 414 686 - -
Acco01g3171 700 Gene3D - 402 700 - -
Acco01g3171 700 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 404 700 - -
Acco01g3171 700 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 32 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3171 Acco-ChrAcco01 49195148 49199075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3171 37 348 Miscellaneous Gene Families AT4G00110 26.488 3.60e-19 89.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3171 01 49195148 49199075 Acco01g3171 01 49195148 49199075 ECH