Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2058 ATGGGATACTCTAGGCAGAGCGTGATCCATAGTTCCACACCATACCATACTCTGCCCTCCGCTTGGCGGCATTCCGCGTCAACTGTGGTTTTGGATTTTCTTGGAAGGTTTTTGGGTCAGAGTCCCTCCTGCCTTCTGCGTTTCGCTCTGAGATCGGTTCCACTCAACTTACAAAAGAATTGGTTTCAGTCTTTTCTTAAGGCTGCACCTTTAAATATTTCTCGTCTTATCAATTATATCATGGCCAGCGATTCTGCAGTAATGTCCAATGGCAATGCCATCTCACATCCTGATCCACAGAGGAATTACCAAGTGGTTGTAGCTGCAACCCGAGATATGGGTATTGGCAAGGATGGAAAACTACCATGGAGACTGCCTGGTGATCTCAAATTTTTTAAGGAGATCACTTCGATGACATCTGATCCTGGGAAGAAGAATGCAGTGATAATGGGTAGAAAAACATGGGAGAGCATCCCTCTGGAGAATCGCCCTCTTCCTGGACGCCTTAATGTTGTTCTTACTCGGTCAGGAAGCTTTGACATTGCAACTGCAGAGAATGTGGTTATATGTGGAAGCATGTCCTCCGCATTGGAATTGTTAGCTGCATCTCCTTACTGTCTATCAATTGAGAAAGTGTTTGTTATAGGAGGTGGCCAGATATTTAGAGAGGCTCTAAATGCACTTGCATGTGAAGCTGTTCACATTACTGAAATTGAGACAAATTTTGAGTGTGATACTTTCATGCCTCAAATTGATTCCTCTGTATTTCAGCCATGGTACTCTTCCTTTCCTAGGGTGGAGAGCAACATCCGCTATTGTTTTACCACATATGTACGAGTTAGGAGTTCTATAACAGAATCCCTGAGTCAGAATTCTGATCAAAATTGTGATACTAGATCAGATTCCTCAAAATTTGAGGTCAAAAACTTCTCTTTCATTCCTAAAATGATTTTTGATAGACATGAGGAGAACATTTATCTCAATCTGGTCCAAGAAATCATCTCTGAAGGCACTGCTAAGGATGATAGGACCGGGACTGGCACCTTCTCGAAATTTGGTTGCCAGATGAGGTTTAATTTGCGTAGAAGCTTTCCTCTTTTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTCTGGTTTATAAGTGGTTCAACAAATGCGAAGGTGCTGCAGGAAAAAGGCATCCATATATGGGATGGCAATGCATCCCGGGAATACCTCGATAGCGTTGGATTGTCAGAGAGGGAGGAGGGTGACTTGGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAAGTATACTGACATGCATGCTGACTACTCTGGCAAAGGATTTGATCAACTTTTAGATGTCATTAACAAGATCAAGCATAATCCTGATGATCGGCGGATTATTCTCTCAGCTTGGAATCCAGTAGATCTTAAATTGATGGCCCTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCCAATGGGGAGTTATCTTGTCAAATGTATCAGCGATCTGCAGACATGGGCCTGGGCGTGCCCTTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAAGTTTGTGATCTTGTTCCGGGTGATTTTGTCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGCGACCTTTGCAGGAGCAGCTTTGGAAACTTCCTAAACCTTTTCCCATTTTGAAGATAAATCCAAAGAAGGATATAGATTCTTTTGTGGCTTCTGATTTCGAACTGATAGGCTATGATCCTTACCAGAAGATAGAGATGAAGATGGCTGTGTAA 1818 0.4307 MGYSRQSVIHSSTPYHTLPSAWRHSASTVVLDFLGRFLGQSPSCLLRFALRSVPLNLQKNWFQSFLKAAPLNISRLINYIMASDSAVMSNGNAISHPDPQRNYQVVVAATRDMGIGKDGKLPWRLPGDLKFFKEITSMTSDPGKKNAVIMGRKTWESIPLENRPLPGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYCLSIEKVFVIGGGQIFREALNALACEAVHITEIETNFECDTFMPQIDSSVFQPWYSSFPRVESNIRYCFTTYVRVRSSITESLSQNSDQNCDTRSDSSKFEVKNFSFIPKMIFDRHEENIYLNLVQEIISEGTAKDDRTGTGTFSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSVGLSEREEGDLGPVYGFQWRHFGAKYTDMHADYSGKGFDQLLDVINKIKHNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAQVCDLVPGDFVHVIGDAHVYRNHVRPLQEQLWKLPKPFPILKINPKKDIDSFVASDFELIGYDPYQKIEMKMAV 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2058 605 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 102 279 IPR001796 GO:0004146|GO:0046654
Acco01g2058 605 PRINTS Thymidylate synthase family signature 483 498 IPR000398 GO:0004799|GO:0006231
Acco01g2058 605 PRINTS Thymidylate synthase family signature 539 556 IPR000398 GO:0004799|GO:0006231
Acco01g2058 605 PRINTS Thymidylate synthase family signature 501 527 IPR000398 GO:0004799|GO:0006231
Acco01g2058 605 PRINTS Thymidylate synthase family signature 364 385 IPR000398 GO:0004799|GO:0006231
Acco01g2058 605 PRINTS Thymidylate synthase family signature 457 476 IPR000398 GO:0004799|GO:0006231
Acco01g2058 605 PANTHER THYMIDYLATE SYNTHASE 1 126 605 IPR045097 GO:0016741
Acco01g2058 605 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 114 136 IPR017925 GO:0004146
Acco01g2058 605 CDD DHFR 106 278 IPR001796 GO:0004146|GO:0046654
Acco01g2058 605 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 313 605 IPR036926 -
Acco01g2058 605 PIRSF DHFR-TS 85 605 IPR012262 GO:0004146|GO:0004799|GO:0006730
Acco01g2058 605 CDD TS_Pyrimidine_HMase 325 559 IPR023451 -
Acco01g2058 605 ProSitePatterns Thymidylate synthase active site. 468 496 IPR020940 GO:0004799|GO:0006231
Acco01g2058 605 Pfam Thymidylate synthase 325 605 IPR023451 -
Acco01g2058 605 Pfam Dihydrofolate reductase 104 279 IPR001796 GO:0004146|GO:0046654
Acco01g2058 605 Gene3D Dihydrofolate Reductase, subunit A 85 281 IPR024072 -
Acco01g2058 605 Hamap Thymidylate synthase [thyA]. 323 605 IPR000398 GO:0004799|GO:0006231
Acco01g2058 605 FunFam Possible thymidylate synthase 317 605 - -
Acco01g2058 605 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 85 280 - -
Acco01g2058 605 SUPERFAMILY Dihydrofolate reductase-like 101 279 IPR024072 -
Acco01g2058 605 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 278 605 IPR036926 -
Acco01g2058 605 NCBIfam thymidylate synthase 325 605 IPR000398 GO:0004799|GO:0006231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2058 Acco-ChrAcco01 36384957 36389799 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g2058 01 36384957 36389799 Acco01g2058 01 36384957 36389799 ECH