Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1490 ATGGCTTCTTCTGTGCTCTCTTCTGCCGCCGCTGCCGTCGCCGCCCCCACCCAGACCATCAAGATCGCCGCCTTCACCGGTCTTAAGGCTGGGGGCTTGCCAGTCAGCAAGAAGACCGTTAACACAGACATCACCTCCCTTGCTAGCAACGGTGGGAGAGTAAGCTGCATGCTGGTGTGGCCCCCACGTGAGAGGAGGAAGTTTGAGACCCTCTCCTACCTTCCACCTCTCAGCCCTGAGTCTCTGCTCAAGGAAGTAGACTACCTTCTCAGAAAGGGATGGATTCCTTGCTTGGAGTTCGAAGTTGGCAACCCATATGTGTACCGTGAGAACCACAGGTCACCAGGGTACTATGATGGAAGATACTGGACGATGTGGAAGCTGCCCATGTTCGGATGCACAGACGCGATTCAGGTGTTGAAGGAGCTGGACGAGCTCAAGAAGGAGTACCCTGACTCTCACGCCAGAATCATCGGCTTCGACAACGTTCGCCAAGTCCAGTGCATCAGCTTCATCGCCTACATTCCTCCCGGCAGCATTTAA 543 0.5525 MASSVLSSAAAAVAAPTQTIKIAAFTGLKAGGLPVSKKTVNTDITSLASNGGRVSCMLVWPPRERRKFETLSYLPPLSPESLLKEVDYLLRKGWIPCLEFEVGNPYVYRENHRSPGYYDGRYWTMWKLPMFGCTDAIQVLKELDELKKEYPDSHARIIGFDNVRQVQCISFIAYIPPGSI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1490 180 Pfam Ribulose bisphosphate carboxylase, small chain 68 174 IPR000894 -
Acco01g1490 180 SUPERFAMILY RuBisCO, small subunit 57 178 IPR036385 -
Acco01g1490 180 CDD RuBisCO_small 66 176 IPR000894 -
Acco01g1490 180 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 177 IPR024681 -
Acco01g1490 180 PRINTS RuBisCO small subunit signature 18 35 IPR024681 -
Acco01g1490 180 PRINTS RuBisCO small subunit signature 94 109 IPR024681 -
Acco01g1490 180 PRINTS RuBisCO small subunit signature 45 63 IPR024681 -
Acco01g1490 180 PRINTS RuBisCO small subunit signature 116 145 IPR024681 -
Acco01g1490 180 PRINTS RuBisCO small subunit signature 66 92 IPR024681 -
Acco01g1490 180 PRINTS RuBisCO small subunit signature 150 176 IPR024681 -
Acco01g1490 180 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 57 180 - -
Acco01g1490 180 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 66 177 IPR000894 -
Acco01g1490 180 Gene3D Ribulose bisphosphate carboxylase, small subunit 57 179 IPR036385 -
Acco01g1490 180 SMART RuBisCO_small_2_a 67 176 IPR000894 -
Acco01g1490 180 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 41 IPR024680 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1490 Acco-ChrAcco01 26573484 26574258 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g1490 01 26573484 26574258 Acco01g1490 01 26573484 26574258 ECH