Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0409 ATGTCTCGGATATTCTCGAGATGGAAGAAGGTGAAAGAGATGGCGATGATTTCTTCTACAGAGACTCAGTTCGGTGTCTCTGCAAGAAATGGTCATAAATGGACGAGGTTCAAATTTCGATTCAATCAGGTTTGCCCAATCTCGACTCACCTAAATTATTTTCCCATCGCCACCCATAGACGACGGGAATCGTTCATCAACGTTCAGGAGCGGTACAAATGGGACCACGGTGGCTCTGGCGACACCCGCAATCGGAATTCTCATGCCCGAAAGATTCGAGCCGATGCTAATTGCCCACGGTGCGCCAGGAACATGGATGTATTTTTCTCCAATCGCCATTTTCCCGGTTCTACTTCTGATTCCAATTTGATTCCTCCTGTTCCTGTTCAAGAAGGAGGAGGTCATCAAACTATGAATCTCTGCCCCAATTGTAAAACAGCGTATTTCTTCAGCCCTTTTGGAACTGCTCCTATCCAAGGTACATTTGTGGAGATTGGTAGGGTCATAGATAGTAAAGTTAATAATACTAGCAATAAGTTGCAGAAGAGGATATCCAATGGTAAAGTCAAAGATGACAGAGAAAGTTATAATAGTCATGGCAGTAATGGTGTAGCAGAATATTTTGCCAATAGAAGTGACAGCAATAATGGGCTTAATGCGACATTCTGGCATAACTTAAGATCCTATAGTGATGGAGATGGTGGTGAACCACCAGAAACTTGGTCTCCCCCACCTGGTTCTTCTAATGGGAATGGGATTGCTGTGCATACTCCTCCAGGCCCACCTTTTGCCCCTGGTCTTAACGTTGTTCGGGCTTCGGGGCCACGGGAGGGTGGTTCAAGTGGGGGAGGTGGCGGTAATGGAGAAAAGACAACATGGGGAGGGTCCAATTTGGGTAAGGATTTACCCACACCTAAGGAGATCTGCAAGGGTCTTGATAAGTTTGTTATTGGCCAGGACAGGGCCAAAAAGGTGCTTTCTGTAGCTGTGTATAATCACTATAAAAGAATACATCATGCCTCATTACAGAAAGGGTCAGGGGCAGATTCAGCGAATCCAAAACCTCTAGATGATGACGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCCTGATGGGTCCAACTGGTTCAGGGAAGACATTGCTTGCAAAGACTCTAGCTCGATTTGTGAACGTTCCATTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATATTGTATAAACTACTTGTGGCAGCTGAGTTCAATGTCCAAGCCACTCAACAAGGGATAGTTTACATTGACGAAGTTGACAAGATAACTAAGAAGGCTGAAAGCTTAAATATTAGCCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCACTGCTAAAAATGTTGGAAGGAACAATAGTAAATGTTCCTGAAAAAGGTGCAAGGAAGCATCCACGGGGCGATAACATCCAGATTGACACAAAGGATATTCTTTTTATATGTGGTGGAGCTTTCGTTGATCTTGAAAAAACAGTATCAGAGAGACGACAAGATTCTTCAATTGGTTTTGGGGCTCCAGTTCGTGCAAATATGAGAACCAATAAAGTAATAAATGTTGAAGTAACATCAGCATTACTTGAGTCGGTGGAAAGTTCTGATCTTATTGCATATGGTCTCATACCTGAGTTCATTGGACGGTTTCCAATCTTAGTCAGTTTATCCGCCTTAACACAAGATCAACTTGTGCAGGTCCTCACAGAACCAAAGAATGCTCTTGGTAAGCAGTACAAGAAATTAATTGGAATGAATAATGTTAAACTTCATTTCACGGAGAAAGCAATGAGATTGATTGCACAGAAAGCAATGGCCAAGAACACTGGCGCCAGAGGTTTAAGAGCTATACTGGAAGGCATCCTAACTGATGCTATGTTTGAGATTCCAGATGTTAAGACTGGAAGTGATCGGATCGACGCGGTAGTCGTCGATGACGAGTCAGTAGGATCAGTAGATTCCCCAGGATGTGGCGGCAAAATTCTTCGTGGGCGTGGTGCTTTAGAGGCTTACCTTGCAAAGACAAAGGACACAGTGGTGAATGGTGAGGTAGCTGAATCAGATTTACAAGAGGGGGAAACACAGAGAGCCATGAGCATGTGA 2154 0.4392 MSRIFSRWKKVKEMAMISSTETQFGVSARNGHKWTRFKFRFNQVCPISTHLNYFPIATHRRRESFINVQERYKWDHGGSGDTRNRNSHARKIRADANCPRCARNMDVFFSNRHFPGSTSDSNLIPPVPVQEGGGHQTMNLCPNCKTAYFFSPFGTAPIQGTFVEIGRVIDSKVNNTSNKLQKRISNGKVKDDRESYNSHGSNGVAEYFANRSDSNNGLNATFWHNLRSYSDGDGGEPPETWSPPPGSSNGNGIAVHTPPGPPFAPGLNVVRASGPREGGSSGGGGGNGEKTTWGGSNLGKDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIHHASLQKGSGADSANPKPLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQATQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTVSERRQDSSIGFGAPVRANMRTNKVINVEVTSALLESVESSDLIAYGLIPEFIGRFPILVSLSALTQDQLVQVLTEPKNALGKQYKKLIGMNNVKLHFTEKAMRLIAQKAMAKNTGARGLRAILEGILTDAMFEIPDVKTGSDRIDAVVVDDESVGSVDSPGCGGKILRGRGALEAYLAKTKDTVVNGEVAESDLQEGETQRAMSM 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0409 717 CDD RecA-like_ClpX 303 573 - -
Acco01g0409 717 SMART AAA_5 365 543 IPR003593 GO:0016887
Acco01g0409 717 Pfam CRISPR-associated protein (Cas_CXXC_CXXC) 96 155 IPR019121 -
Acco01g0409 717 Pfam AAA domain (Cdc48 subfamily) 365 569 IPR003959 GO:0005524|GO:0016887
Acco01g0409 717 SMART ClpB_D2_small_2 576 667 IPR019489 -
Acco01g0409 717 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 575 678 - -
Acco01g0409 717 Gene3D - 296 574 IPR027417 -
Acco01g0409 717 Gene3D - 575 675 - -
Acco01g0409 717 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 296 574 - -
Acco01g0409 717 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 94 694 - -
Acco01g0409 717 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 299 667 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Acco01g0409 717 MobiDBLite consensus disorder prediction 229 303 - -
Acco01g0409 717 MobiDBLite consensus disorder prediction 342 361 - -
Acco01g0409 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 658 IPR027417 -
Acco01g0409 717 Pfam C-terminal, D2-small domain, of ClpB protein 576 646 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0409 Acco-ChrAcco01 4836244 4843201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0409 369 468 Miscellaneous Gene Families AT3G02450 36.634 7.63e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g0409 01 4836244 4843201 Acco01g0409 01 4836244 4843201 ECH