Regulatory proteins (RPs)

  In this study, we systemically compared TF/TR classification rules used in different databases, and derived a set of consensus rules based on the available literature for accurate plant TF/TR identification and classification. For plant PKs, we directly used the HMM profiles developed by Lehti-Shiu and Shiu (2012) to provide a comprehensive classification system. These consensus rules for TF/TR classification and HMM profiles for PK classification were implemented in iTAK, a computational program that provides consistency and uniformity on the identification and classification of plant TFs, TRs, and PKs.
  The relevant gene ids can be obtained from the legume blast and match under the Tools module.This link is Legume blast and match.

Regulatory proteins (RPs)

Transcription factors (TFs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
AP2 or ERF-AP2 AP2 or ERF-ERF AP2 or ERF-RAV Alfin-like B3 B3-ARF BBR-BPC BES1
BSD C2C2-CO-like C2C2-Dof C2C2-GATA C2C2-LSD C2C2-YABBY C2H2 C3H
CAMTA CPP CSD DBB DBP E2F-DP EIL FAR1
GARP-ARR-B GARP-G2-like GRAS GRF GeBP HB-BELL HB-HD-ZIP HB-KNOX
HB-PHD HB-WOX HB-other HRT HSF LFY LIM LOB
MADS-M-type MADS-MIKC MYB MYB-related NAC NF-X1 NF-YA NF-YB
NF-YC NOZZLE OFP PLATZ RWP-RK S1Fa-like SAP SBP
SRS STAT TCP TUB Tify Trihelix ULT VOZ
WRKY Whirly bHLH bZIP zf-HD --- --- ---

Transcription regulators (TRs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
ARID AUX or IAA Coactivator p15 DDT GNAT HMG IWS1 Jumonji
LUG MBF1 MED6 MED7 Others PHD Pseudo ARR-B RB
Rcd1-like SET SNF2 SOH1 SWI or SNF-BAF60b SWI or SNF-SWI3 TAZ TRAF
mTERF --- --- --- --- --- --- ---

Protein kinases (PKs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
AGC-Pl AGC_MAST AGC_NDR AGC_PDK1 AGC_PKA-PKG AGC_RSK-2 Aur AurL-Cr-1
BUB CAMK_AMPK CAMK_CAMK1-DCAMKL CAMK_CAMK1-Tthe CAMK_CAMKL-CHK1 CAMK_CAMKL-LKB CAMK_CDPK CAMK_Cr-1
CAMK_OST1L CK1_CK1 CK1_CK1-Pl CMGC_CDK-CCRK CMGC_CDK-CDK7 CMGC_CDK-CDK8 CMGC_CDK-CRK7-CDK9 CMGC_CDK-PITSLRE
CMGC_CDK-Pl CMGC_CDKL-Cr CMGC_CDKL-Os CMGC_CK2 CMGC_CLK CMGC_DYRK-PRP4 CMGC_DYRK-YAK CMGC_GSK
CMGC_GSKL CMGC_MAPK CMGC_Pl-Tthe CMGC_RCK CMGC_SRPK Group-Cr-1 Group-Pl-2 Group-Pl-3
Group-Pl-4 Group-other IRE1 NAK NEK PEK_GCN2 PEK_PEK RLK-Pelle_C-LEC
RLK-Pelle_CR4L RLK-Pelle_CrRLK1L-1 RLK-Pelle_DLSV RLK-Pelle_DSLV RLK-Pelle_Extensin RLK-Pelle_L-LEC RLK-Pelle_LRK10L-2 RLK-Pelle_LRR-I-1
RLK-Pelle_LRR-I-2 RLK-Pelle_LRR-II RLK-Pelle_LRR-III RLK-Pelle_LRR-IV RLK-Pelle_LRR-IX RLK-Pelle_LRR-V RLK-Pelle_LRR-VI-1 RLK-Pelle_LRR-VI-2
RLK-Pelle_LRR-VII-1 RLK-Pelle_LRR-VII-2 RLK-Pelle_LRR-VII-3 RLK-Pelle_LRR-VIII-1 RLK-Pelle_LRR-XI-1 RLK-Pelle_LRR-XI-2 RLK-Pelle_LRR-XII-1 RLK-Pelle_LRR-XIIIa
RLK-Pelle_LRR-XIIIb RLK-Pelle_LRR-XIV RLK-Pelle_LRR-XV RLK-Pelle_LRR-Xa RLK-Pelle_LRR-Xb-1 RLK-Pelle_LRR-Xb-2 RLK-Pelle_LysM RLK-Pelle_PERK-1
RLK-Pelle_PERK-2 RLK-Pelle_RKF3 RLK-Pelle_RLCK-II RLK-Pelle_RLCK-IV RLK-Pelle_RLCK-IXa RLK-Pelle_RLCK-IXb RLK-Pelle_RLCK-Os RLK-Pelle_RLCK-V
RLK-Pelle_RLCK-VI RLK-Pelle_RLCK-VIII RLK-Pelle_RLCK-VIIa-1 RLK-Pelle_RLCK-VIIa-2 RLK-Pelle_RLCK-VIIb RLK-Pelle_RLCK-X RLK-Pelle_RLCK-XI RLK-Pelle_RLCK-XII-1
RLK-Pelle_RLCK-XII-2 RLK-Pelle_RLCK-XIII RLK-Pelle_RLCK-XV RLK-Pelle_RLCK-XVI RLK-Pelle_SD-2b RLK-Pelle_Singleton RLK-Pelle_URK-1 RLK-Pelle_URK-2
RLK-Pelle_URK-3 RLK-Pelle_URK-Pp-1 RLK-Pelle_WAK RLK-Pelle_WAK_LRK10L-1 SCY1_SCYL1 SCY1_SCYL2 STE_STE-Pl STE_STE11
STE_STE20-Fray STE_STE20-Pl STE_STE20-YSK STE_STE7 TKL-Cr-3 TKL-Cr-4 TKL-Cr-Single TKL-Pl-1
TKL-Pl-2 TKL-Pl-3 TKL-Pl-4 TKL-Pl-5 TKL-Pl-6 TKL-Pl-7 TKL-Pl-8 TKL_CTR1-DRK-1
TKL_CTR1-DRK-2 TKL_Gdt TLK TTK ULK_Fused ULK_ULK4 WEE WNK_NRBP

Results

Select RPs_name Species RPs_type Gene ID Hmm_acc Hmm_name E-value Clan
ULK_Fused Acco PK Acco02g3705 PF00069 Pkinase 2.8e-77 CL0016
ULK_Fused Accr PK Accr2g00190 PF00069 Pkinase 1.7e-78 CL0016
ULK_Fused Adu PK Adu04g00110 PF00069 Pkinase 1.1e-78 CL0016
ULK_Fused Aed PK Aed8g1022 PF00069 Pkinase 5.2e-55 CL0016
ULK_Fused Aev PK Aev02g0909 PF00069 Pkinase 2.7e-78 CL0016
ULK_Fused Ahy PK Ahy14g0162 PF00069 Pkinase 1.20E-78 CL0016
ULK_Fused Ahy PK Ahy4g0110 PF00069 Pkinase 1.20E-78 CL0016
ULK_Fused Aip PK Aip04g00166 PF00069 Pkinase 3.7e-70 CL0016
ULK_Fused Alju PK Alju01g3703 PF00069 Pkinase 2.4e-78 CL0016
ULK_Fused Amo PK Amo14g0209 PF00069 Pkinase 1.1e-78 CL0016
ULK_Fused Arst PK Arst4g00165 PF00069 Pkinase 1.1e-78 CL0016
ULK_Fused Bach PK Bach1g00535 PF00069 Pkinase 1.1e-78 CL0016
ULK_Fused Bisa PK Bisa03g3758 PF00069 Pkinase 2.5e-78 CL0016
ULK_Fused Bva PK Bva03g01967 PF00069 Pkinase 1e-78 CL0016
ULK_Fused Bva PK Bva04g00398 PF00069 Pkinase 1.4e-47 CL0016
ULK_Fused Car PK Car04g02438 PF00069 Pkinase 9.2e-78 CL0016
ULK_Fused Cca PK Cca02g00232 PF00069 Pkinase 7.9e-78 CL0016
ULK_Fused Dere PK Dere01g0151 PF00069 Pkinase 2.5e-78 CL0016
ULK_Fused Dod PK Dod07g0734 PF00069 Pkinase 2.6e-79 CL0016
ULK_Fused Enph PK Enph2g2647 PF00069 Pkinase 2.3e-43 CL0016
ULK_Fused Eupl PK Eupl09g00341 PF00069 Pkinase 1.4e-75 CL0016
ULK_Fused Gabi PK Gabi1418g00004 PF00069 Pkinase 2.3e-29 CL0016
ULK_Fused Gabi PK Gabi1418g00005 PF00069 Pkinase 1.7e-09 CL0016
ULK_Fused Glsi PK Glsi12g0130 PF00069 Pkinase 1.1e-77 CL0016
ULK_Fused Gma PK Gma10g01157 PF00069 Pkinase 4.1e-77 CL0016
ULK_Fused Gma PK Gma20g00688 PF00069 Pkinase 1.8e-60 CL0016
ULK_Fused Gso PK Gso10g1085 PF00069 Pkinase 4e-77 CL0016
ULK_Fused Gso PK Gso20g0532 PF00069 Pkinase 4.3e-78 CL0016
ULK_Fused Lal PK Lal1g0970 PF00069 Pkinase 4.7e-78 CL0016
ULK_Fused Lapu PK Lapu7g01296 PF00069 Pkinase 5.8e-78 CL0016
ULK_Fused Lasa PK Lasa6g01758 PF00069 Pkinase 2.4e-78 CL0016
ULK_Fused Lasa PK Lasa6g01759 PF00069 Pkinase 2.4e-78 CL0016
ULK_Fused Lele PK Lele05g2752 PF00069 Pkinase 2.8e-78 CL0016
ULK_Fused Lele PK Lele06g2731 PF00069 Pkinase 4.1e-42 CL0016
ULK_Fused Lele PK Lele07g2768 PF00069 Pkinase 2.8e-78 CL0016
ULK_Fused Lele PK Lele08g2675 PF00069 Pkinase 7.4e-35 CL0016
ULK_Fused Lja PK Lja2g2895 PF00069 Pkinase 3.6e-19 CL0016
ULK_Fused Lja PK Lja6g0174 PF00069 Pkinase 1.7e-79 CL0016
ULK_Fused Mal PK Mal1g4029 PF00069 Pkinase 8.1e-78 CL0016
ULK_Fused Mepo PK Mepo4g01713 PF00069 Pkinase 9.1e-78 CL0016
ULK_Fused Mesa PK Mesa1g02035 PF00069 Pkinase 9.1e-78 CL0016
ULK_Fused Mesa PK Mesa2g02024 PF00069 Pkinase 1.4e-77 CL0016
ULK_Fused Mesa PK Mesa3g01910 PF00069 Pkinase 1.4e-77 CL0016
ULK_Fused Mesa PK Mesa4g02081 PF00069 Pkinase 1.4e-77 CL0016
ULK_Fused Mibi PK Mibi02g3399 PF00069 Pkinase 2.8e-78 CL0016
ULK_Fused Mtr PK Mtr1g1537 PF00069 Pkinase 9.1e-78 CL0016
ULK_Fused Mupr PK Mupr5686g00001 PF00069 Pkinase 1.2e-79 CL0016
ULK_Fused Phac PK Phac7g03771 PF00069 Pkinase 2.9e-27 CL0016
ULK_Fused Phac PK Phac7g03772 PF00069 Pkinase 4.7e-78 CL0016
ULK_Fused Phco PK Phco6g00430 PF00069 Pkinase 4.7e-78 CL0016
ULK_Fused Pral PK Pral3810g00028 PF00069 Pkinase 8.3e-78 CL0016
ULK_Fused Pral PK Pral3810g00029 PF00069 Pkinase 8.3e-78 CL0016
ULK_Fused Prci PK Prci1g0140 PF00069 Pkinase 3.1e-53 CL0016
ULK_Fused Psa PK Psa6g2170 PF00069 Pkinase 2e-78 CL0016
ULK_Fused Psa PK Psa6g2173 PF00069 Pkinase 2.8e-77 CL0016
ULK_Fused Pste PK Pste4g00086 PF00069 Pkinase 1.5e-27 CL0016
ULK_Fused Pte PK Pte10g01227 PF00069 Pkinase 1.7e-75 CL0016
ULK_Fused Pumo PK Pumo3g01776 PF00069 Pkinase 1e-77 CL0016
ULK_Fused Pumo PK Pumo3g03406 PF00069 Pkinase 1e-77 CL0016
ULK_Fused Pvu PK Pvu7g2484 PF00069 Pkinase 4.7e-78 CL0016
ULK_Fused Rops PK Rops3g01997 PF00069 Pkinase 1.1e-78 CL0016
ULK_Fused Rops PK Rops6g00255 PF00069 Pkinase 2.1e-32 CL0016
ULK_Fused Sebi PK Sebi398g00031 PF00069 Pkinase 4.4e-78 CL0016
ULK_Fused Sebi PK Sebi509g00011 PF00069 Pkinase 4.4e-78 CL0016
ULK_Fused Seca PK Seca7g04718 PF00069 Pkinase 4.8e-78 CL0016
ULK_Fused Seca PK Seca8g04530 PF00069 Pkinase 4.9e-78 CL0016
ULK_Fused Spst PK Spst7g00454 PF00069 Pkinase 4.1e-61 CL0016
ULK_Fused Ssu PK Ssu7g3029 PF00069 Pkinase 1.1e-79 CL0016
ULK_Fused Sto PK Sto6g0058 PF00069 Pkinase 1.1e-77 CL0016
ULK_Fused Tpr PK Tpr1g2498 PF00069 Pkinase 1.2e-77 CL0016
ULK_Fused Trre PK Trre1g01820 PF00069 Pkinase 3.6e-77 CL0016
ULK_Fused Trre PK Trre2g01809 PF00069 Pkinase 3.6e-77 CL0016
ULK_Fused Tsu PK Tsu01g01666 PF00069 Pkinase 1.5e-77 CL0016
ULK_Fused Vifa PK Vifa3g00397 PF00069 Pkinase 5.5e-78 CL0016
ULK_Fused Vifa PK Vifa3g00398 PF00069 Pkinase 5.4e-78 CL0016
ULK_Fused Vifa PK Vifa3g00399 PF00069 Pkinase 5.5e-78 CL0016
ULK_Fused Vimu PK Vimu3g00697 PF00069 Pkinase 3.2e-18 CL0016
ULK_Fused Vium PK Vium2666g00002 PF00069 Pkinase 1.4e-71 CL0016
ULK_Fused Vium PK Vium2666g00003 PF00069 Pkinase 1.7e-77 CL0016
ULK_Fused Viun PK Viun7g00605 PF00069 Pkinase 5.4e-78 CL0016
ULK_Fused Viun PK Viun7g00606 PF00069 Pkinase 5.3e-78 CL0016
ULK_Fused Vivi PK Vivi4g03764 PF00069 Pkinase 3.4e-77 CL0016
ULK_Fused Vivi PK Vivi4g03765 PF00069 Pkinase 2.9e-77 CL0016
ULK_Fused Vivi PK Vivi4g03766 PF00069 Pkinase 4.9e-77 CL0016
ULK_Fused Vivi PK Vivi4g03767 PF00069 Pkinase 4.1e-77 CL0016
ULK_Fused Vra PK Vra8g0461 PF00069 Pkinase 3.1e-78 CL0016
ULK_Fused Vvi PK Vvi16g0187 PF00069 Pkinase 4.8e-77 CL0016