Regulatory proteins (RPs)

  In this study, we systemically compared TF/TR classification rules used in different databases, and derived a set of consensus rules based on the available literature for accurate plant TF/TR identification and classification. For plant PKs, we directly used the HMM profiles developed by Lehti-Shiu and Shiu (2012) to provide a comprehensive classification system. These consensus rules for TF/TR classification and HMM profiles for PK classification were implemented in iTAK, a computational program that provides consistency and uniformity on the identification and classification of plant TFs, TRs, and PKs.
  The relevant gene ids can be obtained from the legume blast and match under the Tools module.This link is Legume blast and match.

Regulatory proteins (RPs)

Transcription factors (TFs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
AP2 or ERF-AP2 AP2 or ERF-ERF AP2 or ERF-RAV Alfin-like B3 B3-ARF BBR-BPC BES1
BSD C2C2-CO-like C2C2-Dof C2C2-GATA C2C2-LSD C2C2-YABBY C2H2 C3H
CAMTA CPP CSD DBB DBP E2F-DP EIL FAR1
GARP-ARR-B GARP-G2-like GRAS GRF GeBP HB-BELL HB-HD-ZIP HB-KNOX
HB-PHD HB-WOX HB-other HRT HSF LFY LIM LOB
MADS-M-type MADS-MIKC MYB MYB-related NAC NF-X1 NF-YA NF-YB
NF-YC NOZZLE OFP PLATZ RWP-RK S1Fa-like SAP SBP
SRS STAT TCP TUB Tify Trihelix ULT VOZ
WRKY Whirly bHLH bZIP zf-HD --- --- ---

Transcription regulators (TRs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
ARID AUX or IAA Coactivator p15 DDT GNAT HMG IWS1 Jumonji
LUG MBF1 MED6 MED7 Others PHD Pseudo ARR-B RB
Rcd1-like SET SNF2 SOH1 SWI or SNF-BAF60b SWI or SNF-SWI3 TAZ TRAF
mTERF --- --- --- --- --- --- ---

Protein kinases (PKs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
AGC-Pl AGC_MAST AGC_NDR AGC_PDK1 AGC_PKA-PKG AGC_RSK-2 Aur AurL-Cr-1
BUB CAMK_AMPK CAMK_CAMK1-DCAMKL CAMK_CAMK1-Tthe CAMK_CAMKL-CHK1 CAMK_CAMKL-LKB CAMK_CDPK CAMK_Cr-1
CAMK_OST1L CK1_CK1 CK1_CK1-Pl CMGC_CDK-CCRK CMGC_CDK-CDK7 CMGC_CDK-CDK8 CMGC_CDK-CRK7-CDK9 CMGC_CDK-PITSLRE
CMGC_CDK-Pl CMGC_CDKL-Cr CMGC_CDKL-Os CMGC_CK2 CMGC_CLK CMGC_DYRK-PRP4 CMGC_DYRK-YAK CMGC_GSK
CMGC_GSKL CMGC_MAPK CMGC_Pl-Tthe CMGC_RCK CMGC_SRPK Group-Cr-1 Group-Pl-2 Group-Pl-3
Group-Pl-4 Group-other IRE1 NAK NEK PEK_GCN2 PEK_PEK RLK-Pelle_C-LEC
RLK-Pelle_CR4L RLK-Pelle_CrRLK1L-1 RLK-Pelle_DLSV RLK-Pelle_DSLV RLK-Pelle_Extensin RLK-Pelle_L-LEC RLK-Pelle_LRK10L-2 RLK-Pelle_LRR-I-1
RLK-Pelle_LRR-I-2 RLK-Pelle_LRR-II RLK-Pelle_LRR-III RLK-Pelle_LRR-IV RLK-Pelle_LRR-IX RLK-Pelle_LRR-V RLK-Pelle_LRR-VI-1 RLK-Pelle_LRR-VI-2
RLK-Pelle_LRR-VII-1 RLK-Pelle_LRR-VII-2 RLK-Pelle_LRR-VII-3 RLK-Pelle_LRR-VIII-1 RLK-Pelle_LRR-XI-1 RLK-Pelle_LRR-XI-2 RLK-Pelle_LRR-XII-1 RLK-Pelle_LRR-XIIIa
RLK-Pelle_LRR-XIIIb RLK-Pelle_LRR-XIV RLK-Pelle_LRR-XV RLK-Pelle_LRR-Xa RLK-Pelle_LRR-Xb-1 RLK-Pelle_LRR-Xb-2 RLK-Pelle_LysM RLK-Pelle_PERK-1
RLK-Pelle_PERK-2 RLK-Pelle_RKF3 RLK-Pelle_RLCK-II RLK-Pelle_RLCK-IV RLK-Pelle_RLCK-IXa RLK-Pelle_RLCK-IXb RLK-Pelle_RLCK-Os RLK-Pelle_RLCK-V
RLK-Pelle_RLCK-VI RLK-Pelle_RLCK-VIII RLK-Pelle_RLCK-VIIa-1 RLK-Pelle_RLCK-VIIa-2 RLK-Pelle_RLCK-VIIb RLK-Pelle_RLCK-X RLK-Pelle_RLCK-XI RLK-Pelle_RLCK-XII-1
RLK-Pelle_RLCK-XII-2 RLK-Pelle_RLCK-XIII RLK-Pelle_RLCK-XV RLK-Pelle_RLCK-XVI RLK-Pelle_SD-2b RLK-Pelle_Singleton RLK-Pelle_URK-1 RLK-Pelle_URK-2
RLK-Pelle_URK-3 RLK-Pelle_URK-Pp-1 RLK-Pelle_WAK RLK-Pelle_WAK_LRK10L-1 SCY1_SCYL1 SCY1_SCYL2 STE_STE-Pl STE_STE11
STE_STE20-Fray STE_STE20-Pl STE_STE20-YSK STE_STE7 TKL-Cr-3 TKL-Cr-4 TKL-Cr-Single TKL-Pl-1
TKL-Pl-2 TKL-Pl-3 TKL-Pl-4 TKL-Pl-5 TKL-Pl-6 TKL-Pl-7 TKL-Pl-8 TKL_CTR1-DRK-1
TKL_CTR1-DRK-2 TKL_Gdt TLK TTK ULK_Fused ULK_ULK4 WEE WNK_NRBP

Results

Select RPs_name Species RPs_type Gene ID Hmm_acc Hmm_name E-value Clan
SAP Acco TF Acco05g0161 None None None None
SAP Acco TF Acco10g0193 None None None None
SAP Accr TF Accr3g02675 None None None None
SAP Accr TF Accr4g02529 None None None None
SAP Accr TF Accr4g02530 None None None None
SAP Adu TF Adu07g00104 None None None None
SAP Aed TF Aed3g2636 None None None None
SAP Aev TF Aev07g0088 None None None None
SAP Ahy TF Ahy17g0173 None None None None
SAP Ahy TF Ahy7g0067 None None None None
SAP Aip TF Aip07g00115 None None None None
SAP Alju TF Alju07g0177 None None None None
SAP Alju TF Alju08g2663 None None None None
SAP Amo TF Amo07g0187 None None None None
SAP Apr TF Apr9g1881 None None None None
SAP Arst TF Arst7g00189 None None None None
SAP Bach TF Bach12g01794 None None None None
SAP Bach TF Bach3g00448 None None None None
SAP Bisa TF Bisa05g2378 None None None None
SAP Bisa TF Bisa09g2582 None None None None
SAP Bva TF Bva12g00623 None None None None
SAP Bva TF Bva12g03195 None None None None
SAP Car TF Car02g02182 None None None None
SAP Cca TF Cca05g02073 None None None None
SAP Dere TF Dere04g2766 None None None None
SAP Dere TF Dere05g0542 None None None None
SAP Dod TF Dod08g0105 None None None None
SAP Enph TF Enph7g1653 None None None None
SAP Eupl TF Eupl06g00237 None None None None
SAP Gabi TF Gabi2155g00043 None None None None
SAP Glsi TF Glsi08g2853 None None None None
SAP Glsi TF Glsi10g2585 None None None None
SAP Gma TF Gma02g02850 None None None None
SAP Gma TF Gma14g00088 None None None None
SAP Gso TF Gso14g0083 None None None None
SAP Gso TF Gso2g2589 None None None None
SAP Lal TF Lal6g0024 None None None None
SAP Lan TF Lan11g0020 None None None None
SAP Lapu TF Lapu8g01163 None None None None
SAP Lasa TF Lasa2g02402 None None None None
SAP Lele TF Lele02g1205 None None None None
SAP Lele TF Lele04g1165 None None None None
SAP Lele TF Lele25g1954 None None None None
SAP Lele TF Lele26g2000 None None None None
SAP Lele TF Lele27g0121 None None None None
SAP Lele TF Lele28g2005 None None None None
SAP Mal TF Mal8g0138 None None None None
SAP Mepo TF Mepo7g03010 None None None None
SAP Mesa TF Mesa17g04603 None None None None
SAP Mesa TF Mesa18g04754 None None None None
SAP Mesa TF Mesa19g04500 None None None None
SAP Mesa TF Mesa20g04541 None None None None
SAP Mesa TF Mesa20g04544 None None None None
SAP Mibi TF Mibi05g2520 None None None None
SAP Mibi TF Mibi08g0153 None None None None
SAP Mtr TF Mtr5g3484 None None None None
SAP Mupr TF Mupr6461g00005 None None None None
SAP Phac TF Phac8g03816 None None None None
SAP Phco TF Phco3g00097 None None None None
SAP Pral TF Pral2923g00012 None None None None
SAP Pral TF Pral3813g00007 None None None None
SAP Prci TF Prci2g3693 None None None None
SAP Prci TF Prci8g2220 None None None None
SAP Psa TF Psa2g0119 None None None None
SAP Pte TF Pte4g00321 None None None None
SAP Pte TF Pte9g00906 None None None None
SAP Pumo TF Pumo9g01735 None None None None
SAP Pvu TF Pvu8g2930 None None None None
SAP Sebi TF Sebi159g00047 None None None None
SAP Seca TF Seca7g00118 None None None None
SAP Seca TF Seca8g00120 None None None None
SAP Spst TF Spst8g01033 None None None None
SAP Ssu TF Ssu6g3637 None None None None
SAP Sto TF Sto5g3644 None None None None
SAP Stsc TF Stsc90960g00007 None None None None
SAP Tpr TF Tpr4g0289 None None None None
SAP Tpr TF Tpr4g0348 None None None None
SAP Trre TF Trre10g05140 None None None None
SAP Trre TF Trre9g05287 None None None None
SAP Tsu TF Tsu05g04138 None None None None
SAP Vian TF Vian7g01059 None None None None
SAP Vifa TF Vifa1g03661 None None None None
SAP Vimu TF Vimu1g00246 None None None None
SAP Vium TF Vium1240g00003 None None None None
SAP Viun TF Viun8g03038 None None None None
SAP Vivi TF Vivi7g02496 None None None None
SAP Vra TF Vra6g0091 None None None None