Regulatory proteins (RPs)

  In this study, we systemically compared TF/TR classification rules used in different databases, and derived a set of consensus rules based on the available literature for accurate plant TF/TR identification and classification. For plant PKs, we directly used the HMM profiles developed by Lehti-Shiu and Shiu (2012) to provide a comprehensive classification system. These consensus rules for TF/TR classification and HMM profiles for PK classification were implemented in iTAK, a computational program that provides consistency and uniformity on the identification and classification of plant TFs, TRs, and PKs.
  The relevant gene ids can be obtained from the legume blast and match under the Tools module.This link is Legume blast and match.

Regulatory proteins (RPs)

Transcription regulators (TRs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
ARID AUX or IAA Coactivator p15 DDT GNAT HMG IWS1 Jumonji
LUG MBF1 MED6 MED7 Others PHD Pseudo ARR-B RB
Rcd1-like SET SNF2 SOH1 SWI or SNF-BAF60b SWI or SNF-SWI3 TAZ TRAF
mTERF --- --- --- --- --- --- ---

Protein kinases (PKs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
AGC-Pl AGC_MAST AGC_NDR AGC_PDK1 AGC_PKA-PKG AGC_RSK-2 Aur AurL-Cr-1
BUB CAMK_AMPK CAMK_CAMK1-DCAMKL CAMK_CAMK1-Tthe CAMK_CAMKL-CHK1 CAMK_CAMKL-LKB CAMK_CDPK CAMK_Cr-1
CAMK_OST1L CK1_CK1 CK1_CK1-Pl CMGC_CDK-CCRK CMGC_CDK-CDK7 CMGC_CDK-CDK8 CMGC_CDK-CRK7-CDK9 CMGC_CDK-PITSLRE
CMGC_CDK-Pl CMGC_CDKL-Cr CMGC_CDKL-Os CMGC_CK2 CMGC_CLK CMGC_DYRK-PRP4 CMGC_DYRK-YAK CMGC_GSK
CMGC_GSKL CMGC_MAPK CMGC_Pl-Tthe CMGC_RCK CMGC_SRPK Group-Cr-1 Group-Pl-2 Group-Pl-3
Group-Pl-4 Group-other IRE1 NAK NEK PEK_GCN2 PEK_PEK RLK-Pelle_C-LEC
RLK-Pelle_CR4L RLK-Pelle_CrRLK1L-1 RLK-Pelle_DLSV RLK-Pelle_DSLV RLK-Pelle_Extensin RLK-Pelle_L-LEC RLK-Pelle_LRK10L-2 RLK-Pelle_LRR-I-1
RLK-Pelle_LRR-I-2 RLK-Pelle_LRR-II RLK-Pelle_LRR-III RLK-Pelle_LRR-IV RLK-Pelle_LRR-IX RLK-Pelle_LRR-V RLK-Pelle_LRR-VI-1 RLK-Pelle_LRR-VI-2
RLK-Pelle_LRR-VII-1 RLK-Pelle_LRR-VII-2 RLK-Pelle_LRR-VII-3 RLK-Pelle_LRR-VIII-1 RLK-Pelle_LRR-XI-1 RLK-Pelle_LRR-XI-2 RLK-Pelle_LRR-XII-1 RLK-Pelle_LRR-XIIIa
RLK-Pelle_LRR-XIIIb RLK-Pelle_LRR-XIV RLK-Pelle_LRR-XV RLK-Pelle_LRR-Xa RLK-Pelle_LRR-Xb-1 RLK-Pelle_LRR-Xb-2 RLK-Pelle_LysM RLK-Pelle_PERK-1
RLK-Pelle_PERK-2 RLK-Pelle_RKF3 RLK-Pelle_RLCK-II RLK-Pelle_RLCK-IV RLK-Pelle_RLCK-IXa RLK-Pelle_RLCK-IXb RLK-Pelle_RLCK-Os RLK-Pelle_RLCK-V
RLK-Pelle_RLCK-VI RLK-Pelle_RLCK-VIII RLK-Pelle_RLCK-VIIa-1 RLK-Pelle_RLCK-VIIa-2 RLK-Pelle_RLCK-VIIb RLK-Pelle_RLCK-X RLK-Pelle_RLCK-XI RLK-Pelle_RLCK-XII-1
RLK-Pelle_RLCK-XII-2 RLK-Pelle_RLCK-XIII RLK-Pelle_RLCK-XV RLK-Pelle_RLCK-XVI RLK-Pelle_SD-2b RLK-Pelle_Singleton RLK-Pelle_URK-1 RLK-Pelle_URK-2
RLK-Pelle_URK-3 RLK-Pelle_URK-Pp-1 RLK-Pelle_WAK RLK-Pelle_WAK_LRK10L-1 SCY1_SCYL1 SCY1_SCYL2 STE_STE-Pl STE_STE11
STE_STE20-Fray STE_STE20-Pl STE_STE20-YSK STE_STE7 TKL-Cr-3 TKL-Cr-4 TKL-Cr-Single TKL-Pl-1
TKL-Pl-2 TKL-Pl-3 TKL-Pl-4 TKL-Pl-5 TKL-Pl-6 TKL-Pl-7 TKL-Pl-8 TKL_CTR1-DRK-1
TKL_CTR1-DRK-2 TKL_Gdt TLK TTK ULK_Fused ULK_ULK4 WEE WNK_NRBP

Results


Select RPs_name Species RPs_type Gene ID Hmm_acc Hmm_name E-value Clan
S1Fa-like Acco TF Acco02g1564 PF04689 S1FA 2.3e-39 No_clan
S1Fa-like Acco TF Acco06g0767 PF04689 S1FA 3.9e-40 No_clan
S1Fa-like Accr TF Accr2g02182 PF04689 S1FA 8.2e-42 No_clan
S1Fa-like Adu TF Adu04g01945 PF00069 Pkinase 2.3e-32 CL0016
S1Fa-like Adu TF Adu06g01447 PF04689 S1FA 2.5e-39 No_clan
S1Fa-like Aed TF Aed2g1056 PF00069 Pkinase 1.2e-29 CL0016
S1Fa-like Aed TF Aed2g1830 PF04689 S1FA 1.9e-39 No_clan
S1Fa-like Aed TF Aed8g0388 PF04689 S1FA 1.9e-38 No_clan
S1Fa-like Aev TF Aev02g2310 PF04689 S1FA 9.5e-40 No_clan
S1Fa-like Aev TF Aev06g0240 PF04689 S1FA 4.2e-37 No_clan
S1Fa-like Aev TF Aev06g2999 PF00069 Pkinase 2.3e-33 CL0016
S1Fa-like Ahy TF Ahy14g1985 PF00069 Pkinase 2.60E-32 CL0016
S1Fa-like Ahy TF Ahy16g1576 PF04689 S1FA 2.60E-39 No_clan
S1Fa-like Ahy TF Ahy4g1746 PF00069 Pkinase 2.30E-32 CL0016
S1Fa-like Ahy TF Ahy6g1419 PF04689 S1FA 2.60E-39 No_clan
S1Fa-like Aip TF Aip04g02266 PF00069 Pkinase 2.6e-32 CL0016
S1Fa-like Aip TF Aip06g01673 PF04689 S1FA 2.5e-39 No_clan
S1Fa-like Alju TF Alju01g1536 PF04689 S1FA 1.2e-41 No_clan
S1Fa-like Alju TF Alju03g2647 PF04689 S1FA 1.3e-38 No_clan
S1Fa-like Amo TF Amo04g1824 PF00069 Pkinase 3e-32 CL0016
S1Fa-like Amo TF Amo06g1178 PF04689 S1FA 2.6e-39 No_clan
S1Fa-like Apr TF Apr4g0178 PF04689 S1FA 4.2e-39 No_clan
S1Fa-like Apr TF Apr8g0470 PF04689 S1FA 1.8e-39 No_clan
S1Fa-like Arst TF Arst4g02649 PF00069 Pkinase 2.3e-32 CL0016
S1Fa-like Arst TF Arst6g01901 PF04689 S1FA 2.5e-39 No_clan
S1Fa-like Bach TF Bach1g02547 PF04689 S1FA 2.4e-39 No_clan
S1Fa-like Bach TF Bach8g00776 PF04689 S1FA 3.9e-40 No_clan
S1Fa-like Bisa TF Bisa03g0803 PF04689 S1FA 1.2e-41 No_clan
S1Fa-like Bisa TF Bisa05g2833 PF04689 S1FA 3e-14 No_clan
S1Fa-like Bisa TF Bisa07g2177 PF04689 S1FA 1.4e-37 No_clan
S1Fa-like Bisa TF Bisa11g1635 PF04689 S1FA 8.8e-17 No_clan
S1Fa-like Bva TF Bva02g00418 PF00069 Pkinase 8.1e-32 CL0016
S1Fa-like Bva TF Bva04g02600 PF04689 S1FA 4.6e-36 No_clan
S1Fa-like Bva TF Bva13g01929 PF04689 S1FA 3.8e-40 No_clan
S1Fa-like Car TF Car03g02465 PF04689 S1FA 8.4e-39 No_clan
S1Fa-like Car TF Car04g01166 PF00069 Pkinase 6.8e-32 CL0016
S1Fa-like Cca TF Cca01g01947 PF00069 Pkinase 1.2e-32 CL0016
S1Fa-like Cca TF Cca02g00850 PF04689 S1FA 5.8e-39 No_clan
S1Fa-like Cca TF Cca03g02355 PF04689 S1FA 8.3e-41 No_clan
S1Fa-like Dere TF Dere01g2899 PF04689 S1FA 5e-41 No_clan
S1Fa-like Dere TF Dere02g0984 PF04689 S1FA 9e-39 No_clan
S1Fa-like Dod TF Dod01g1034 PF00069 Pkinase 7.4e-34 CL0016
S1Fa-like Dod TF Dod01g2712 PF04689 S1FA 1.9e-38 No_clan
S1Fa-like Dod TF Dod07g0048 PF04689 S1FA 1.2e-39 No_clan
S1Fa-like Enph TF Enph2g1195 PF04689 S1FA 2.3e-41 No_clan
S1Fa-like Enph TF Enph4g1729 PF04689 S1FA 4.7e-19 No_clan
S1Fa-like Eupl TF Eupl01g01578 PF04689 S1FA 5.3e-40 No_clan
S1Fa-like Eupl TF Eupl05g01517 PF04689 S1FA 7e-41 No_clan
S1Fa-like Gabi TF Gabi3825g00005 PF04689 S1FA 5.6e-40 No_clan
S1Fa-like Gabi TF Gabi687g00006 PF04689 S1FA 1.4e-39 No_clan
S1Fa-like Glsi TF Glsi02g2826 PF04689 S1FA 3.7e-40 No_clan
S1Fa-like Glsi TF Glsi11g0924 PF04689 S1FA 2.7e-38 No_clan
S1Fa-like Gma TF Gma03g01650 PF04689 S1FA 9.8e-41 No_clan
S1Fa-like Gma TF Gma10g00472 PF04689 S1FA 3.9e-39 No_clan
S1Fa-like Gma TF Gma13g01182 PF04689 S1FA 1.4e-38 No_clan
S1Fa-like Gma TF Gma19g01698 PF04689 S1FA 3.8e-40 No_clan
S1Fa-like Gso TF Gso10g0441 PF04689 S1FA 4.1e-39 No_clan
S1Fa-like Gso TF Gso13g1063 PF04689 S1FA 1.5e-38 No_clan
S1Fa-like Gso TF Gso19g1494 PF04689 S1FA 3.9e-40 No_clan
S1Fa-like Gso TF Gso3g1509 PF04689 S1FA 1e-40 No_clan
S1Fa-like Lal TF Lal11g1151 PF04689 S1FA 7.4e-39 No_clan
S1Fa-like Lal TF Lal13g1509 PF04689 S1FA 3.3e-39 No_clan
S1Fa-like Lal TF Lal14g0729 PF00069 Pkinase 1.2e-33 CL0016
S1Fa-like Lal TF Lal1g1824 PF04689 S1FA 1.6e-37 No_clan
S1Fa-like Lal TF Lal20g0084 PF04689 S1FA 6.2e-39 No_clan
S1Fa-like Lal TF Lal24g0865 PF04689 S1FA 1.2e-38 No_clan
S1Fa-like Lal TF Lal2g1940 PF00069 Pkinase 7.5e-34 CL0016
S1Fa-like Lan TF Lan11g1412 PF04689 S1FA 4.2e-35 No_clan
S1Fa-like Lan TF Lan12g0210 PF00069 Pkinase 6.9e-34 CL0016
S1Fa-like Lan TF Lan19g0436 PF04689 S1FA 2.4e-38 No_clan
S1Fa-like Lan TF Lan7g1399 PF00069 Pkinase 1.5e-33 CL0016
S1Fa-like Lapu TF Lapu6g00494 PF04689 S1FA 1.9e-40 No_clan
S1Fa-like Lasa TF Lasa3g03373 PF04689 S1FA 9.7e-37 No_clan
S1Fa-like Lasa TF Lasa3g03374 PF04689 S1FA 3.8e-38 No_clan
S1Fa-like Lele TF Lele05g1226 PF04689 S1FA 4.3e-41 No_clan
S1Fa-like Lele TF Lele06g1091 PF04689 S1FA 6.7e-41 No_clan
S1Fa-like Lele TF Lele07g1273 PF04689 S1FA 1.6e-40 No_clan
S1Fa-like Lele TF Lele08g1076 PF04689 S1FA 6.7e-41 No_clan
S1Fa-like Lja TF Lja1g0872 PF04689 S1FA 2.7e-40 No_clan
S1Fa-like Lja TF Lja1g3337 PF00069 Pkinase 1.7e-32 CL0016
S1Fa-like Lja TF Lja5g2684 PF04689 S1FA 8e-40 No_clan
S1Fa-like Mal TF Mal3g4174 PF04689 S1FA 1e-39 No_clan
S1Fa-like Mal TF Mal3g4175 PF04689 S1FA 3.4e-40 No_clan
S1Fa-like Mepo TF Mepo3g03309 PF04689 S1FA 3.8e-40 No_clan
S1Fa-like Mesa TF Mesa15g05306 PF00069 Pkinase 1.3e-31 CL0016
S1Fa-like Mesa TF Mesa16g05414 PF00069 Pkinase 1.4e-31 CL0016
S1Fa-like Mesa TF Mesa25g00737 PF04689 S1FA 3.2e-39 No_clan
S1Fa-like Mesa TF Mesa25g00740 PF04689 S1FA 2.2e-40 No_clan
S1Fa-like Mesa TF Mesa26g00981 PF04689 S1FA 2.2e-40 No_clan
S1Fa-like Mesa TF Mesa26g00983 PF04689 S1FA 7e-40 No_clan
S1Fa-like Mesa TF Mesa27g01016 PF04689 S1FA 2.2e-40 No_clan
S1Fa-like Mesa TF Mesa27g01019 PF04689 S1FA 7.8e-40 No_clan
S1Fa-like Mesa TF Mesa28g00808 PF04689 S1FA 2.2e-40 No_clan
S1Fa-like Mesa TF Mesa28g00812 PF04689 S1FA 7.8e-40 No_clan
S1Fa-like Mibi TF Mibi02g1424 PF04689 S1FA 5e-42 No_clan
S1Fa-like Mtr TF Mtr7g3071 PF04689 S1FA 1.6e-39 No_clan
S1Fa-like Mtr TF Mtr7g3073 PF04689 S1FA 2.3e-40 No_clan
S1Fa-like Mupr TF Mupr1347g00002 PF00069 Pkinase 4.5e-31 CL0016
S1Fa-like Mupr TF Mupr2421g00005 PF04689 S1FA 6e-35 No_clan
S1Fa-like Phac TF Phac1g02553 PF04689 S1FA 3.9e-40 No_clan
S1Fa-like Phac TF Phac7g01642 PF04689 S1FA 2.4e-39 No_clan
S1Fa-like Phco TF Phco2g02013 PF04689 S1FA 3.8e-40 No_clan
S1Fa-like Phco TF Phco3g02282 PF00069 Pkinase 9.3e-31 CL0016
S1Fa-like Phco TF Phco6g02060 PF04689 S1FA 6.3e-39 No_clan
S1Fa-like Pral TF Pral2348g00001 PF04689 S1FA 4.5e-41 No_clan
S1Fa-like Pral TF Pral5356g00025 PF04689 S1FA 3.3e-38 No_clan
S1Fa-like Pral TF Pral5356g00026 PF04689 S1FA 3.4e-38 No_clan
S1Fa-like Pral TF Pral5356g00027 PF04689 S1FA 3.5e-38 No_clan
S1Fa-like Pral TF Pral5356g00028 PF04689 S1FA 3.5e-38 No_clan
S1Fa-like Pral TF Pral5409g00051 PF04689 S1FA 3.3e-41 No_clan
S1Fa-like Pral TF Pral5409g00052 PF04689 S1FA 4.5e-41 No_clan
S1Fa-like Prci TF Prci1g2745 PF04689 S1FA 3e-41 No_clan
S1Fa-like Prci TF Prci1g2746 PF04689 S1FA 3e-41 No_clan
S1Fa-like Prci TF Prci1g2747 PF04689 S1FA 3e-41 No_clan
S1Fa-like Prci TF Prci1g2748 PF04689 S1FA 3e-41 No_clan
S1Fa-like Prci TF Prci3g3045 PF04689 S1FA 7.4e-38 No_clan
S1Fa-like Psa TF Psa3g1029 PF04689 S1FA 1e-37 No_clan
S1Fa-like Psa TF Psa7g5711 PF00069 Pkinase 3.6e-31 CL0016
S1Fa-like Pste TF Pste4g02275 PF04689 S1FA 2.3e-40 No_clan
S1Fa-like Pste TF Pste6g00561 PF07714 PK_Tyr_Ser-Thr 6.3e-07 CL0016
S1Fa-like Pte TF Pte13g00551 PF04689 S1FA 5.1e-37 No_clan
S1Fa-like Pte TF Pte15g00441 PF04689 S1FA 3e-38 No_clan
S1Fa-like Pte TF Pte18g01633 PF04689 S1FA 2.8e-37 No_clan
S1Fa-like Pte TF Pte6g01901 PF04689 S1FA 1.5e-37 No_clan
S1Fa-like Pumo TF Pumo3g03301 PF04689 S1FA 1.2e-39 No_clan
S1Fa-like Pumo TF Pumo5g03031 PF04689 S1FA 3.1e-41 No_clan
S1Fa-like Pumo TF Pumo7g01656 PF00069 Pkinase 8.4e-28 CL0016
S1Fa-like Pvu TF Pvu1g1820 PF04689 S1FA 3.9e-40 No_clan
S1Fa-like Pvu TF Pvu7g1101 PF04689 S1FA 2.4e-39 No_clan
S1Fa-like Rops TF Rops6g01062 PF04689 S1FA 1.5e-40 No_clan
S1Fa-like Rops TF Rops8g02027 PF00069 Pkinase 4.5e-33 CL0016
S1Fa-like Rops TF Rops8g03288 PF04689 S1FA 1.7e-39 No_clan
S1Fa-like Sebi TF Sebi1g00015 PF04689 S1FA 1.5e-39 No_clan
S1Fa-like Sebi TF Sebi384g00027 PF04689 S1FA 4.1e-40 No_clan
S1Fa-like Sebi TF Sebi543g00015 PF04689 S1FA 1.3e-39 No_clan
S1Fa-like Seca TF Seca1g04989 PF04689 S1FA 4.1e-40 No_clan
S1Fa-like Seca TF Seca2g04605 PF04689 S1FA 1.5e-39 No_clan
S1Fa-like Seca TF Seca7g03495 PF04689 S1FA 4.9e-34 No_clan
S1Fa-like Seca TF Seca7g05594 PF04689 S1FA 5.9e-39 No_clan
S1Fa-like Seca TF Seca8g05403 PF04689 S1FA 1.1e-39 No_clan
S1Fa-like Spst TF Spst1g02922 PF04689 S1FA 1.1e-39 No_clan
S1Fa-like Spst TF Spst4g01031 PF00069 Pkinase 8.1e-32 CL0016
S1Fa-like Spst TF Spst7g00805 PF04689 S1FA 2.1e-38 No_clan
S1Fa-like Ssu TF Ssu4g1039 PF04689 S1FA 7.6e-41 No_clan
S1Fa-like Ssu TF Ssu4g2429 PF00069 Pkinase 1.5e-31 CL0016
S1Fa-like Ssu TF Ssu7g2388 PF04689 S1FA 9.7e-40 No_clan
S1Fa-like Sto TF Sto13g3252 PF04689 S1FA 5.6e-38 No_clan
S1Fa-like Sto TF Sto8g0877 PF00069 Pkinase 7.1e-50 CL0016
S1Fa-like Stsc TF Stsc121281g00002 PF04689 S1FA 2e-39 No_clan
S1Fa-like Stsc TF Stsc60429g00019 PF04689 S1FA 8.6e-40 No_clan
S1Fa-like Tpr TF Tpr6g0926 PF04689 S1FA 3e-40 No_clan
S1Fa-like Tpr TF Tpr6g0927 PF04689 S1FA 3.1e-40 No_clan
S1Fa-like Tpr TF Tpr6g1873 PF00069 Pkinase 2.8e-31 CL0016
S1Fa-like Tpr TF Tpr6g2221 PF00069 Pkinase 2.8e-31 CL0016
S1Fa-like Trme TF Trme152051g00001 PF04689 S1FA 6.2e-05 No_clan
S1Fa-like Trme TF Trme165526g00001 PF04689 S1FA 0.00024 No_clan
S1Fa-like Trre TF Trre13g01725 PF00069 Pkinase 3.6e-31 CL0016
S1Fa-like Trre TF Trre13g04229 PF04689 S1FA 2.5e-38 No_clan
S1Fa-like Trre TF Trre13g04245 PF04689 S1FA 2.8e-39 No_clan
S1Fa-like Trre TF Trre13g04246 PF04689 S1FA 5.6e-40 No_clan
S1Fa-like Trre TF Trre14g01718 PF00069 Pkinase 3.5e-31 CL0016
S1Fa-like Trre TF Trre14g04092 PF04689 S1FA 2.1e-39 No_clan
S1Fa-like Trre TF Trre14g04093 PF04689 S1FA 3.5e-40 No_clan
S1Fa-like Trre TF Trre14g04095 PF04689 S1FA 5.6e-40 No_clan
S1Fa-like Tsu TF Tsu04g01447 PF00069 Pkinase 3.6e-31 CL0016
S1Fa-like Tsu TF Tsu07g03856 PF04689 S1FA 1.8e-38 No_clan
S1Fa-like Tsu TF Tsu07g03857 PF04689 S1FA 5.6e-40 No_clan
S1Fa-like Vian TF Vian2g02342 PF04689 S1FA 2.3e-40 No_clan
S1Fa-like Vifa TF Vifa2g05408 PF00069 Pkinase 4e-30 CL0016
S1Fa-like Vium TF Vium2368g00010 PF04689 S1FA 2.3e-40 No_clan
S1Fa-like Viun TF Viun1g02343 PF04689 S1FA 3.3e-40 No_clan
S1Fa-like Viun TF Viun1g02344 PF04689 S1FA 2.6e-40 No_clan
S1Fa-like Viun TF Viun7g01080 PF04689 S1FA 7.4e-39 No_clan
S1Fa-like Vivi TF Vivi1g07043 PF04689 S1FA 5.6e-26 No_clan
S1Fa-like Vivi TF Vivi6g04210 PF04689 S1FA 1.9e-39 No_clan
S1Fa-like Vivi TF Vivi6g04211 PF04689 S1FA 1.8e-38 No_clan
S1Fa-like Vra TF Vra3g0397 PF04689 S1FA 2.4e-40 No_clan
S1Fa-like Vvi TF Vvi6g0331 PF04689 S1FA 2.9e-40 No_clan
S1Fa-like Vvi TF Vvi8g0672 PF04689 S1FA 3.2e-38 No_clan