Regulatory proteins (RPs)
In this study, we systemically compared TF/TR classification rules used in different databases, and derived a set of consensus rules based on the available literature for accurate plant TF/TR identification and classification. For plant PKs, we directly used the HMM profiles developed by
Lehti-Shiu and Shiu (2012) to provide a comprehensive classification system. These consensus rules for TF/TR classification and HMM profiles for PK classification were implemented in
iTAK, a computational program that provides consistency and uniformity on the identification and classification of plant TFs, TRs, and PKs.
The relevant gene ids can be obtained from the legume blast and match under the Tools module.This link is Legume blast and match.
Regulatory proteins (RPs)
Results
| Select | RPs_name | Species | RPs_type | Gene ID | Hmm_acc | Hmm_name | E-value | Clan |
|---|---|---|---|---|---|---|---|---|
| HRT | Acco | TF | Acco08g1414 | None | None | None | None | |
| HRT | Accr | TF | Accr13g01366 | None | None | None | None | |
| HRT | Adu | TF | Adu05g02406 | None | None | None | None | |
| HRT | Aed | TF | Aed7g0024 | None | None | None | None | |
| HRT | Aev | TF | Aev05g3269 | None | None | None | None | |
| HRT | Ahy | TF | Ahy15g3015 | None | None | None | None | |
| HRT | Ahy | TF | Ahy5g2248 | None | None | None | None | |
| HRT | Aip | TF | Aip05g03370 | None | None | None | None | |
| HRT | Alju | TF | Alju10g1401 | None | None | None | None | |
| HRT | Amo | TF | Amo05g3678 | None | None | None | None | |
| HRT | Apr | TF | Apr6g1216 | None | None | None | None | |
| HRT | Arst | TF | Arst5g03048 | None | None | None | None | |
| HRT | Bach | TF | Bach1g01639 | None | None | None | None | |
| HRT | Bach | TF | Bach1g01643 | None | None | None | None | |
| HRT | Bisa | TF | Bisa01g0027 | None | None | None | None | |
| HRT | Bva | TF | Bva03g00483 | None | None | None | None | |
| HRT | Bva | TF | Bva03g00486 | None | None | None | None | |
| HRT | Car | TF | Car03g02039 | None | None | None | None | |
| HRT | Car | TF | Car08g01840 | None | None | None | None | |
| HRT | Cca | TF | Cca08g00036 | None | None | None | None | |
| HRT | Dere | TF | Dere06g2139 | None | None | None | None | |
| HRT | Dod | TF | Dod02g3449 | None | None | None | None | |
| HRT | Enph | TF | Enph12g0002 | None | None | None | None | |
| HRT | Eupl | TF | Eupl09g00374 | None | None | None | None | |
| HRT | Eupl | TF | Eupl09g00376 | None | None | None | None | |
| HRT | Eupl | TF | Eupl09g00378 | None | None | None | None | |
| HRT | Gabi | TF | Gabi976g00001 | None | None | None | None | |
| HRT | Glsi | TF | Glsi01g2348 | None | None | None | None | |
| HRT | Glsi | TF | Glsi01g2349 | None | None | None | None | |
| HRT | Gma | TF | Gma07g01196 | None | None | None | None | |
| HRT | Gso | TF | Gso7g1097 | None | None | None | None | |
| HRT | Lal | TF | Lal25g0116 | None | None | None | None | |
| HRT | Lan | TF | Lan6g2004 | None | None | None | None | |
| HRT | Lapu | TF | Lapu4g00079 | None | None | None | None | |
| HRT | Lasa | TF | Lasa1g03770 | None | None | None | None | |
| HRT | Lele | TF | Lele46g0785 | None | None | None | None | |
| HRT | Lele | TF | Lele48g0660 | None | None | None | None | |
| HRT | Lele | TF | Lele48g0707 | None | None | None | None | |
| HRT | Lja | TF | Lja2g1887 | None | None | None | None | |
| HRT | Mal | TF | Mal3g3408 | None | None | None | None | |
| HRT | Mal | TF | Mal5g1012 | None | None | None | None | |
| HRT | Mal | TF | Mal5g1013 | None | None | None | None | |
| HRT | Mepo | TF | Mepo3g02769 | None | None | None | None | |
| HRT | Mepo | TF | Mepo7g00299 | None | None | None | None | |
| HRT | Mepo | TF | Mepo7g00300 | None | None | None | None | |
| HRT | Mesa | TF | Mesa21g03044 | None | None | None | None | |
| HRT | Mesa | TF | Mesa21g03045 | None | None | None | None | |
| HRT | Mesa | TF | Mesa22g03433 | None | None | None | None | |
| HRT | Mesa | TF | Mesa23g03400 | None | None | None | None | |
| HRT | Mesa | TF | Mesa23g03401 | None | None | None | None | |
| HRT | Mesa | TF | Mesa24g02306 | None | None | None | None | |
| HRT | Mesa | TF | Mesa24g02307 | None | None | None | None | |
| HRT | Mesa | TF | Mesa24g02321 | None | None | None | None | |
| HRT | Mesa | TF | Mesa25g01435 | None | None | None | None | |
| HRT | Mesa | TF | Mesa26g01555 | None | None | None | None | |
| HRT | Mesa | TF | Mesa28g01577 | None | None | None | None | |
| HRT | Mibi | TF | Mibi01g2632 | None | None | None | None | |
| HRT | Mibi | TF | Mibi01g2633 | None | None | None | None | |
| HRT | Mtr | TF | Mtr6g2416 | None | None | None | None | |
| HRT | Mtr | TF | Mtr6g2418 | None | None | None | None | |
| HRT | Mtr | TF | Mtr7g2557 | None | None | None | None | |
| HRT | Mupr | TF | Mupr7114g00005 | PF14432 | DYW_deaminase | 3.2e-35 | CL0109 | |
| HRT | Phac | TF | Phac10g00691 | None | None | None | None | |
| HRT | Phac | TF | Phac4g02328 | None | None | None | None | |
| HRT | Phac | TF | Phac4g02329 | None | None | None | None | |
| HRT | Phac | TF | Phac4g02330 | None | None | None | None | |
| HRT | Phco | TF | Phco5g00034 | None | None | None | None | |
| HRT | Pral | TF | Pral2082g00002 | None | None | None | None | |
| HRT | Pral | TF | Pral2082g00003 | None | None | None | None | |
| HRT | Pral | TF | Pral2082g00004 | None | None | None | None | |
| HRT | Pral | TF | Pral5079g00052 | None | None | None | None | |
| HRT | Pral | TF | Pral5079g00053 | None | None | None | None | |
| HRT | Pral | TF | Pral5079g00054 | None | None | None | None | |
| HRT | Prci | TF | Prci14g1179 | None | None | None | None | |
| HRT | Prci | TF | Prci14g1180 | None | None | None | None | |
| HRT | Prci | TF | Prci14g1181 | None | None | None | None | |
| HRT | Psa | TF | Psa1g1134 | None | None | None | None | |
| HRT | Pste | TF | Pste9g01650 | None | None | None | None | |
| HRT | Pte | TF | Pte5g00946 | None | None | None | None | |
| HRT | Pumo | TF | Pumo6g03249 | None | None | None | None | |
| HRT | Pvu | TF | Pvu4g1814 | None | None | None | None | |
| HRT | Rops | TF | Rops5g00038 | None | None | None | None | |
| HRT | Sebi | TF | Sebi116g00043 | None | None | None | None | |
| HRT | Seca | TF | Seca10g03149 | None | None | None | None | |
| HRT | Seca | TF | Seca9g00113 | None | None | None | None | |
| HRT | Spst | TF | Spst4g02583 | None | None | None | None | |
| HRT | Sto | TF | Sto10g3204 | None | None | None | None | |
| HRT | Stsc | TF | Stsc90872g00010 | None | None | None | None | |
| HRT | Stsc | TF | Stsc90900g00009 | None | None | None | None | |
| HRT | Tpr | TF | Tpr5g0192 | None | None | None | None | |
| HRT | Tpr | TF | Tpr6g1400 | None | None | None | None | |
| HRT | Trre | TF | Trre13g03209 | None | None | None | None | |
| HRT | Trre | TF | Trre14g03142 | None | None | None | None | |
| HRT | Trre | TF | Trre4g04176 | None | None | None | None | |
| HRT | Tsu | TF | Tsu03g03552 | None | None | None | None | |
| HRT | Tsu | TF | Tsu07g03256 | None | None | None | None | |
| HRT | Vian | TF | Vian8g01657 | None | None | None | None | |
| HRT | Vifa | TF | Vifa1g06516 | None | None | None | None | |
| HRT | Vimu | TF | Vimu8g01279 | None | None | None | None | |
| HRT | Vium | TF | Vium9463g00025 | None | None | None | None | |
| HRT | Viun | TF | Viun4g00054 | None | None | None | None | |
| HRT | Vivi | TF | Vivi4g00021 | None | None | None | None | |
| HRT | Vra | TF | Vra1g0425 | None | None | None | None | |
| HRT | Vvi | TF | Vvi11g0227 | None | None | None | None |