Regulatory proteins (RPs)

  In this study, we systemically compared TF/TR classification rules used in different databases, and derived a set of consensus rules based on the available literature for accurate plant TF/TR identification and classification. For plant PKs, we directly used the HMM profiles developed by Lehti-Shiu and Shiu (2012) to provide a comprehensive classification system. These consensus rules for TF/TR classification and HMM profiles for PK classification were implemented in iTAK, a computational program that provides consistency and uniformity on the identification and classification of plant TFs, TRs, and PKs.
  The relevant gene ids can be obtained from the legume blast and match under the Tools module.This link is Legume blast and match.

Regulatory proteins (RPs)

Transcription factors (TFs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
AP2 or ERF-AP2 AP2 or ERF-ERF AP2 or ERF-RAV Alfin-like B3 B3-ARF BBR-BPC BES1
BSD C2C2-CO-like C2C2-Dof C2C2-GATA C2C2-LSD C2C2-YABBY C2H2 C3H
CAMTA CPP CSD DBB DBP E2F-DP EIL FAR1
GARP-ARR-B GARP-G2-like GRAS GRF GeBP HB-BELL HB-HD-ZIP HB-KNOX
HB-PHD HB-WOX HB-other HRT HSF LFY LIM LOB
MADS-M-type MADS-MIKC MYB MYB-related NAC NF-X1 NF-YA NF-YB
NF-YC NOZZLE OFP PLATZ RWP-RK S1Fa-like SAP SBP
SRS STAT TCP TUB Tify Trihelix ULT VOZ
WRKY Whirly bHLH bZIP zf-HD --- --- ---

Transcription regulators (TRs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
ARID AUX or IAA Coactivator p15 DDT GNAT HMG IWS1 Jumonji
LUG MBF1 MED6 MED7 Others PHD Pseudo ARR-B RB
Rcd1-like SET SNF2 SOH1 SWI or SNF-BAF60b SWI or SNF-SWI3 TAZ TRAF
mTERF --- --- --- --- --- --- ---

Protein kinases (PKs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
AGC-Pl AGC_MAST AGC_NDR AGC_PDK1 AGC_PKA-PKG AGC_RSK-2 Aur AurL-Cr-1
BUB CAMK_AMPK CAMK_CAMK1-DCAMKL CAMK_CAMK1-Tthe CAMK_CAMKL-CHK1 CAMK_CAMKL-LKB CAMK_CDPK CAMK_Cr-1
CAMK_OST1L CK1_CK1 CK1_CK1-Pl CMGC_CDK-CCRK CMGC_CDK-CDK7 CMGC_CDK-CDK8 CMGC_CDK-CRK7-CDK9 CMGC_CDK-PITSLRE
CMGC_CDK-Pl CMGC_CDKL-Cr CMGC_CDKL-Os CMGC_CK2 CMGC_CLK CMGC_DYRK-PRP4 CMGC_DYRK-YAK CMGC_GSK
CMGC_GSKL CMGC_MAPK CMGC_Pl-Tthe CMGC_RCK CMGC_SRPK Group-Cr-1 Group-Pl-2 Group-Pl-3
Group-Pl-4 Group-other IRE1 NAK NEK PEK_GCN2 PEK_PEK RLK-Pelle_C-LEC
RLK-Pelle_CR4L RLK-Pelle_CrRLK1L-1 RLK-Pelle_DLSV RLK-Pelle_DSLV RLK-Pelle_Extensin RLK-Pelle_L-LEC RLK-Pelle_LRK10L-2 RLK-Pelle_LRR-I-1
RLK-Pelle_LRR-I-2 RLK-Pelle_LRR-II RLK-Pelle_LRR-III RLK-Pelle_LRR-IV RLK-Pelle_LRR-IX RLK-Pelle_LRR-V RLK-Pelle_LRR-VI-1 RLK-Pelle_LRR-VI-2
RLK-Pelle_LRR-VII-1 RLK-Pelle_LRR-VII-2 RLK-Pelle_LRR-VII-3 RLK-Pelle_LRR-VIII-1 RLK-Pelle_LRR-XI-1 RLK-Pelle_LRR-XI-2 RLK-Pelle_LRR-XII-1 RLK-Pelle_LRR-XIIIa
RLK-Pelle_LRR-XIIIb RLK-Pelle_LRR-XIV RLK-Pelle_LRR-XV RLK-Pelle_LRR-Xa RLK-Pelle_LRR-Xb-1 RLK-Pelle_LRR-Xb-2 RLK-Pelle_LysM RLK-Pelle_PERK-1
RLK-Pelle_PERK-2 RLK-Pelle_RKF3 RLK-Pelle_RLCK-II RLK-Pelle_RLCK-IV RLK-Pelle_RLCK-IXa RLK-Pelle_RLCK-IXb RLK-Pelle_RLCK-Os RLK-Pelle_RLCK-V
RLK-Pelle_RLCK-VI RLK-Pelle_RLCK-VIII RLK-Pelle_RLCK-VIIa-1 RLK-Pelle_RLCK-VIIa-2 RLK-Pelle_RLCK-VIIb RLK-Pelle_RLCK-X RLK-Pelle_RLCK-XI RLK-Pelle_RLCK-XII-1
RLK-Pelle_RLCK-XII-2 RLK-Pelle_RLCK-XIII RLK-Pelle_RLCK-XV RLK-Pelle_RLCK-XVI RLK-Pelle_SD-2b RLK-Pelle_Singleton RLK-Pelle_URK-1 RLK-Pelle_URK-2
RLK-Pelle_URK-3 RLK-Pelle_URK-Pp-1 RLK-Pelle_WAK RLK-Pelle_WAK_LRK10L-1 SCY1_SCYL1 SCY1_SCYL2 STE_STE-Pl STE_STE11
STE_STE20-Fray STE_STE20-Pl STE_STE20-YSK STE_STE7 TKL-Cr-3 TKL-Cr-4 TKL-Cr-Single TKL-Pl-1
TKL-Pl-2 TKL-Pl-3 TKL-Pl-4 TKL-Pl-5 TKL-Pl-6 TKL-Pl-7 TKL-Pl-8 TKL_CTR1-DRK-1
TKL_CTR1-DRK-2 TKL_Gdt TLK TTK ULK_Fused ULK_ULK4 WEE WNK_NRBP

Results

Select RPs_name Species RPs_type Gene ID Hmm_acc Hmm_name E-value Clan
CMGC_DYRK-YAK Acco PK Acco08g2343 PF00069 Pkinase 7e-50 CL0016
CMGC_DYRK-YAK Accr PK Accr15g00004 PF00069 Pkinase 7.4e-50 CL0016
CMGC_DYRK-YAK Adu PK Adu01g00760 PF00069 Pkinase 1.1e-43 CL0016
CMGC_DYRK-YAK Aed PK Aed7g1398 PF00069 Pkinase 2.8e-50 CL0016
CMGC_DYRK-YAK Aev PK Aev01g0192 PF00069 Pkinase 9.9e-51 CL0016
CMGC_DYRK-YAK Ahy PK Ahy11g0063 PF00069 Pkinase 1.20E-50 CL0016
CMGC_DYRK-YAK Ahy PK Ahy1g0729 PF00069 Pkinase 1.20E-50 CL0016
CMGC_DYRK-YAK Aip PK Aip01g00054 PF00069 Pkinase 1e-50 CL0016
CMGC_DYRK-YAK Aip PK Aip07g02237 None None None None
CMGC_DYRK-YAK Alju PK Alju10g2327 PF00069 Pkinase 5.1e-50 CL0016
CMGC_DYRK-YAK Apr PK Apr3g0498 PF00069 Pkinase 9.7e-51 CL0016
CMGC_DYRK-YAK Arst PK Arst1g01022 PF00069 Pkinase 2.1e-50 CL0016
CMGC_DYRK-YAK Arst PK Arst26234487g00230 PF00069 Pkinase 2.1e-50 CL0016
CMGC_DYRK-YAK Bach PK Bach7g01728 PF00069 Pkinase 9.3e-50 CL0016
CMGC_DYRK-YAK Bisa PK Bisa02g2264 PF00069 Pkinase 1.3e-49 CL0016
CMGC_DYRK-YAK Bva PK Bva14g00006 PF00069 Pkinase 8.8e-50 CL0016
CMGC_DYRK-YAK Car PK Car07g01768 PF00069 Pkinase 3.5e-49 CL0016
CMGC_DYRK-YAK Car PK Car07g01769 PF00069 Pkinase 6.7e-16 CL0016
CMGC_DYRK-YAK Car PK Car07g01772 PF00069 Pkinase 3.9e-17 CL0016
CMGC_DYRK-YAK Cca PK Cca11g00869 PF00069 Pkinase 4e-50 CL0016
CMGC_DYRK-YAK Dere PK Dere07g2211 PF00069 Pkinase 9.8e-50 CL0016
CMGC_DYRK-YAK Dod PK Dod05g0188 PF00069 Pkinase 9.9e-51 CL0016
CMGC_DYRK-YAK Enph PK Enph8g1140 PF00069 Pkinase 5e-49 CL0016
CMGC_DYRK-YAK Eupl PK Eupl08g01327 PF00069 Pkinase 6.3e-40 CL0016
CMGC_DYRK-YAK Gabi PK Gabi1409g00006 PF00069 Pkinase 3.7e-51 CL0016
CMGC_DYRK-YAK Glsi PK Glsi04g2290 PF00069 Pkinase 3e-49 CL0016
CMGC_DYRK-YAK Gma PK Gma16g00931 PF00069 Pkinase 9.9e-51 CL0016
CMGC_DYRK-YAK Gso PK Gso16g0839 PF00069 Pkinase 3.4e-50 CL0016
CMGC_DYRK-YAK Gso PK Gso8g2207 PF00069 Pkinase 1.1e-50 CL0016
CMGC_DYRK-YAK Lal PK Lal16g1750 PF00069 Pkinase 8.1e-52 CL0016
CMGC_DYRK-YAK Lal PK Lal23g0068 PF00069 Pkinase 1.1e-50 CL0016
CMGC_DYRK-YAK Lan PK Lan17g1205 PF00069 Pkinase 2.7e-51 CL0016
CMGC_DYRK-YAK Lan PK Lan6g1559 PF00069 Pkinase 1.9e-51 CL0016
CMGC_DYRK-YAK Lapu PK Lapu3g02128 PF00069 Pkinase 4.5e-51 CL0016
CMGC_DYRK-YAK Lasa PK Lasa4g02131 PF00069 Pkinase 7.3e-50 CL0016
CMGC_DYRK-YAK Lele PK Lele29g1587 PF00069 Pkinase 6.9e-49 CL0016
CMGC_DYRK-YAK Lele PK Lele30g0002 PF00069 Pkinase 6.9e-50 CL0016
CMGC_DYRK-YAK Lele PK Lele31g0002 PF00069 Pkinase 6.1e-50 CL0016
CMGC_DYRK-YAK Lele PK Lele32g1374 PF00069 Pkinase 3.2e-49 CL0016
CMGC_DYRK-YAK Lja PK Lja4g2964 PF00069 Pkinase 2.5e-50 CL0016
CMGC_DYRK-YAK Mal PK Mal5g3130 PF00069 Pkinase 1.1e-50 CL0016
CMGC_DYRK-YAK Mepo PK Mepo1g02342 PF00069 Pkinase 1.1e-50 CL0016
CMGC_DYRK-YAK Mesa PK Mesa29g02473 PF00069 Pkinase 1.2e-50 CL0016
CMGC_DYRK-YAK Mesa PK Mesa30g02487 PF00069 Pkinase 8.5e-51 CL0016
CMGC_DYRK-YAK Mesa PK Mesa31g02387 PF00069 Pkinase 1.2e-50 CL0016
CMGC_DYRK-YAK Mesa PK Mesa31g02388 PF00069 Pkinase 3.6e-35 CL0016
CMGC_DYRK-YAK Mesa PK Mesa32g02377 PF00069 Pkinase 1.2e-50 CL0016
CMGC_DYRK-YAK Mibi PK Mibi07g2162 PF00069 Pkinase 4.7e-50 CL0016
CMGC_DYRK-YAK Mtr PK Mtr8g2232 PF00069 Pkinase 1.1e-50 CL0016
CMGC_DYRK-YAK Mupr PK Mupr7193g00011 PF00069 Pkinase 2.1e-46 CL0016
CMGC_DYRK-YAK Phac PK Phac3g04309 PF00069 Pkinase 1.4e-48 CL0016
CMGC_DYRK-YAK Phco PK Phco8g00266 PF00069 Pkinase 1e-49 CL0016
CMGC_DYRK-YAK Pral PK Pral4143g00008 PF00069 Pkinase 6.5e-50 CL0016
CMGC_DYRK-YAK Pral PK Pral4143g00009 PF00069 Pkinase 4.2e-50 CL0016
CMGC_DYRK-YAK Pral PK Pral4143g00010 PF00069 Pkinase 4.2e-50 CL0016
CMGC_DYRK-YAK Prci PK Prci1564g0001 PF00069 Pkinase 1.2e-49 CL0016
CMGC_DYRK-YAK Prci PK Prci6g2934 PF00069 Pkinase 3.8e-48 CL0016
CMGC_DYRK-YAK Psa PK Psa2g2745 PF00069 Pkinase 3.4e-09 CL0016
CMGC_DYRK-YAK Psa PK Psa3g2580 PF00069 Pkinase 4e-26 CL0016
CMGC_DYRK-YAK Psa PK Psa4g2595 PF00069 Pkinase 7.4e-50 CL0016
CMGC_DYRK-YAK Pste PK Pste7g00461 PF00069 Pkinase 1.4e-49 CL0016
CMGC_DYRK-YAK Pte PK Pte15g02365 PF00069 Pkinase 1e-49 CL0016
CMGC_DYRK-YAK Pte PK Pte6g00357 PF00069 Pkinase 4.5e-50 CL0016
CMGC_DYRK-YAK Pumo PK Pumo4g02440 PF00069 Pkinase 8.9e-51 CL0016
CMGC_DYRK-YAK Pvu PK Pvu3g2835 PF00069 Pkinase 1e-49 CL0016
CMGC_DYRK-YAK Rops PK Rops2g03062 PF00069 Pkinase 8.8e-51 CL0016
CMGC_DYRK-YAK Seca PK Seca11g03228 PF00069 Pkinase 3.3e-49 CL0016
CMGC_DYRK-YAK Seca PK Seca12g03280 PF00069 Pkinase 1.1e-50 CL0016
CMGC_DYRK-YAK Spst PK Spst3g03646 PF00069 Pkinase 1.5e-51 CL0016
CMGC_DYRK-YAK Ssu PK Ssu5g0924 PF00069 Pkinase 5.5e-51 CL0016
CMGC_DYRK-YAK Sto PK Sto4g1710 PF00069 Pkinase 1.4e-49 CL0016
CMGC_DYRK-YAK Stsc PK Stsc151114g00021 PF00069 Pkinase 6.9e-33 CL0016
CMGC_DYRK-YAK Stsc PK Stsc151114g00022 PF00069 Pkinase 1.3e-50 CL0016
CMGC_DYRK-YAK Tpr PK Tpr4g4465 PF00069 Pkinase 1.2e-50 CL0016
CMGC_DYRK-YAK Trme PK Trme8540g00001 None None None None
CMGC_DYRK-YAK Trre PK Trre15g01787 PF00069 Pkinase 7.3e-51 CL0016
CMGC_DYRK-YAK Trre PK Trre15g01788 PF00069 Pkinase 7.5e-51 CL0016
CMGC_DYRK-YAK Trre PK Trre15g01789 PF00069 Pkinase 6.4e-47 CL0016
CMGC_DYRK-YAK Trre PK Trre16g01866 PF00069 Pkinase 1.5e-50 CL0016
CMGC_DYRK-YAK Trre PK Trre16g01867 PF00069 Pkinase 1.5e-50 CL0016
CMGC_DYRK-YAK Tsu PK Tsu04g03079 PF00069 Pkinase 6e-51 CL0016
CMGC_DYRK-YAK Vian PK Vian1g01978 PF00069 Pkinase 1.4e-51 CL0016
CMGC_DYRK-YAK Vifa PK Vifa2g01093 PF00069 Pkinase 1e-47 CL0016
CMGC_DYRK-YAK Vifa PK Vifa2g01094 PF00069 Pkinase 1.9e-47 CL0016
CMGC_DYRK-YAK Vifa PK Vifa2g01462 PF00069 Pkinase 2.4e-24 CL0016
CMGC_DYRK-YAK Vifa PK Vifa2g01463 PF00069 Pkinase 2.6e-24 CL0016
CMGC_DYRK-YAK Vifa PK Vifa4g02090 PF00069 Pkinase 1.9e-50 CL0016
CMGC_DYRK-YAK Vifa PK Vifa4g02091 PF00069 Pkinase 3.5e-50 CL0016
CMGC_DYRK-YAK Vifa PK Vifa4g02092 PF00069 Pkinase 3.6e-50 CL0016
CMGC_DYRK-YAK Vifa PK Vifa4g03747 PF00069 Pkinase 7.9e-34 CL0016
CMGC_DYRK-YAK Vifa PK Vifa4g03748 PF00069 Pkinase 4.5e-33 CL0016
CMGC_DYRK-YAK Vifa PK Vifa4g03749 PF00069 Pkinase 2.4e-33 CL0016
CMGC_DYRK-YAK Vifa PK Vifa5g03831 PF00069 Pkinase 1.4e-38 CL0016
CMGC_DYRK-YAK Vifa PK Vifa5g03832 PF00069 Pkinase 7.5e-39 CL0016
CMGC_DYRK-YAK Vifa PK Vifa6g01091 PF00069 Pkinase 2.3e-24 CL0016
CMGC_DYRK-YAK Vimu PK Vimu11g00963 PF00069 Pkinase 8.2e-48 CL0016
CMGC_DYRK-YAK Vium PK Vium12138g00001 PF00069 Pkinase 2.5e-30 CL0016
CMGC_DYRK-YAK Viun PK Viun3g03352 PF00069 Pkinase 5.8e-51 CL0016
CMGC_DYRK-YAK Vivi PK Vivi102g00040 PF00069 Pkinase 7e-50 CL0016
CMGC_DYRK-YAK Vivi PK Vivi1g03361 PF00069 Pkinase 7e-50 CL0016
CMGC_DYRK-YAK Vra PK Vra7g0272 PF00069 Pkinase 2.9e-51 CL0016
CMGC_DYRK-YAK Vvi PK Vvi16g0031 PF00069 Pkinase 1.1e-49 CL0016