Regulatory proteins (RPs)

  In this study, we systemically compared TF/TR classification rules used in different databases, and derived a set of consensus rules based on the available literature for accurate plant TF/TR identification and classification. For plant PKs, we directly used the HMM profiles developed by Lehti-Shiu and Shiu (2012) to provide a comprehensive classification system. These consensus rules for TF/TR classification and HMM profiles for PK classification were implemented in iTAK, a computational program that provides consistency and uniformity on the identification and classification of plant TFs, TRs, and PKs.
  The relevant gene ids can be obtained from the legume blast and match under the Tools module.This link is Legume blast and match.

Regulatory proteins (RPs)

Transcription factors (TFs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
AP2 or ERF-AP2 AP2 or ERF-ERF AP2 or ERF-RAV Alfin-like B3 B3-ARF BBR-BPC BES1
BSD C2C2-CO-like C2C2-Dof C2C2-GATA C2C2-LSD C2C2-YABBY C2H2 C3H
CAMTA CPP CSD DBB DBP E2F-DP EIL FAR1
GARP-ARR-B GARP-G2-like GRAS GRF GeBP HB-BELL HB-HD-ZIP HB-KNOX
HB-PHD HB-WOX HB-other HRT HSF LFY LIM LOB
MADS-M-type MADS-MIKC MYB MYB-related NAC NF-X1 NF-YA NF-YB
NF-YC NOZZLE OFP PLATZ RWP-RK S1Fa-like SAP SBP
SRS STAT TCP TUB Tify Trihelix ULT VOZ
WRKY Whirly bHLH bZIP zf-HD --- --- ---

Transcription regulators (TRs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
ARID AUX or IAA Coactivator p15 DDT GNAT HMG IWS1 Jumonji
LUG MBF1 MED6 MED7 Others PHD Pseudo ARR-B RB
Rcd1-like SET SNF2 SOH1 SWI or SNF-BAF60b SWI or SNF-SWI3 TAZ TRAF
mTERF --- --- --- --- --- --- ---

Protein kinases (PKs)

Column 1 Column 2 Column 3 Column 4 Column 5 Column 6 Column 7 Column 8
AGC-Pl AGC_MAST AGC_NDR AGC_PDK1 AGC_PKA-PKG AGC_RSK-2 Aur AurL-Cr-1
BUB CAMK_AMPK CAMK_CAMK1-DCAMKL CAMK_CAMK1-Tthe CAMK_CAMKL-CHK1 CAMK_CAMKL-LKB CAMK_CDPK CAMK_Cr-1
CAMK_OST1L CK1_CK1 CK1_CK1-Pl CMGC_CDK-CCRK CMGC_CDK-CDK7 CMGC_CDK-CDK8 CMGC_CDK-CRK7-CDK9 CMGC_CDK-PITSLRE
CMGC_CDK-Pl CMGC_CDKL-Cr CMGC_CDKL-Os CMGC_CK2 CMGC_CLK CMGC_DYRK-PRP4 CMGC_DYRK-YAK CMGC_GSK
CMGC_GSKL CMGC_MAPK CMGC_Pl-Tthe CMGC_RCK CMGC_SRPK Group-Cr-1 Group-Pl-2 Group-Pl-3
Group-Pl-4 Group-other IRE1 NAK NEK PEK_GCN2 PEK_PEK RLK-Pelle_C-LEC
RLK-Pelle_CR4L RLK-Pelle_CrRLK1L-1 RLK-Pelle_DLSV RLK-Pelle_DSLV RLK-Pelle_Extensin RLK-Pelle_L-LEC RLK-Pelle_LRK10L-2 RLK-Pelle_LRR-I-1
RLK-Pelle_LRR-I-2 RLK-Pelle_LRR-II RLK-Pelle_LRR-III RLK-Pelle_LRR-IV RLK-Pelle_LRR-IX RLK-Pelle_LRR-V RLK-Pelle_LRR-VI-1 RLK-Pelle_LRR-VI-2
RLK-Pelle_LRR-VII-1 RLK-Pelle_LRR-VII-2 RLK-Pelle_LRR-VII-3 RLK-Pelle_LRR-VIII-1 RLK-Pelle_LRR-XI-1 RLK-Pelle_LRR-XI-2 RLK-Pelle_LRR-XII-1 RLK-Pelle_LRR-XIIIa
RLK-Pelle_LRR-XIIIb RLK-Pelle_LRR-XIV RLK-Pelle_LRR-XV RLK-Pelle_LRR-Xa RLK-Pelle_LRR-Xb-1 RLK-Pelle_LRR-Xb-2 RLK-Pelle_LysM RLK-Pelle_PERK-1
RLK-Pelle_PERK-2 RLK-Pelle_RKF3 RLK-Pelle_RLCK-II RLK-Pelle_RLCK-IV RLK-Pelle_RLCK-IXa RLK-Pelle_RLCK-IXb RLK-Pelle_RLCK-Os RLK-Pelle_RLCK-V
RLK-Pelle_RLCK-VI RLK-Pelle_RLCK-VIII RLK-Pelle_RLCK-VIIa-1 RLK-Pelle_RLCK-VIIa-2 RLK-Pelle_RLCK-VIIb RLK-Pelle_RLCK-X RLK-Pelle_RLCK-XI RLK-Pelle_RLCK-XII-1
RLK-Pelle_RLCK-XII-2 RLK-Pelle_RLCK-XIII RLK-Pelle_RLCK-XV RLK-Pelle_RLCK-XVI RLK-Pelle_SD-2b RLK-Pelle_Singleton RLK-Pelle_URK-1 RLK-Pelle_URK-2
RLK-Pelle_URK-3 RLK-Pelle_URK-Pp-1 RLK-Pelle_WAK RLK-Pelle_WAK_LRK10L-1 SCY1_SCYL1 SCY1_SCYL2 STE_STE-Pl STE_STE11
STE_STE20-Fray STE_STE20-Pl STE_STE20-YSK STE_STE7 TKL-Cr-3 TKL-Cr-4 TKL-Cr-Single TKL-Pl-1
TKL-Pl-2 TKL-Pl-3 TKL-Pl-4 TKL-Pl-5 TKL-Pl-6 TKL-Pl-7 TKL-Pl-8 TKL_CTR1-DRK-1
TKL_CTR1-DRK-2 TKL_Gdt TLK TTK ULK_Fused ULK_ULK4 WEE WNK_NRBP

Results

Select RPs_name Species RPs_type Gene ID Hmm_acc Hmm_name E-value Clan
CAMK_CAMK1-DCAMKL Acco PK Acco01g2577 PF00069 Pkinase 1.6e-60 CL0016
CAMK_CAMK1-DCAMKL Accr PK Accr1g02242 PF00069 Pkinase 1.5e-59 CL0016
CAMK_CAMK1-DCAMKL Adu PK Adu01g01040 PF00069 Pkinase 1.3e-61 CL0016
CAMK_CAMK1-DCAMKL Aed PK Aed4g1405 PF00069 Pkinase 2e-27 CL0016
CAMK_CAMK1-DCAMKL Aev PK Aev08g1333 PF00069 Pkinase 1.5e-56 CL0016
CAMK_CAMK1-DCAMKL Ahy PK Ahy11g1005 PF00069 Pkinase 4.80E-62 CL0016
CAMK_CAMK1-DCAMKL Ahy PK Ahy1g1006 PF00069 Pkinase 1.30E-61 CL0016
CAMK_CAMK1-DCAMKL Aip PK Aip01g01023 PF00069 Pkinase 2.8e-62 CL0016
CAMK_CAMK1-DCAMKL Alju PK Alju02g1473 PF00069 Pkinase 8.3e-59 CL0016
CAMK_CAMK1-DCAMKL Amo PK Amo01g1213 PF13499 EF-hand_7 4.4e-12 CL0220
CAMK_CAMK1-DCAMKL Amo PK Amo11g0829 PF00069 Pkinase 3.8e-62 CL0016
CAMK_CAMK1-DCAMKL Apr PK Apr5g0867 PF00069 Pkinase 8.1e-57 CL0016
CAMK_CAMK1-DCAMKL Arst PK Arst1g01409 PF00069 Pkinase 1.3e-61 CL0016
CAMK_CAMK1-DCAMKL Arst PK Arst1g01410 PF00069 Pkinase 1.3e-61 CL0016
CAMK_CAMK1-DCAMKL Bach PK Bach13g00318 PF00069 Pkinase 2e-60 CL0016
CAMK_CAMK1-DCAMKL Bisa PK Bisa12g1717 PF00069 Pkinase 1.4e-56 CL0016
CAMK_CAMK1-DCAMKL Bva PK Bva09g01522 PF00069 Pkinase 1.2e-60 CL0016
CAMK_CAMK1-DCAMKL Car PK Car07g02432 PF00069 Pkinase 1.6e-58 CL0016
CAMK_CAMK1-DCAMKL Cca PK Cca04g01732 PF00069 Pkinase 4.8e-58 CL0016
CAMK_CAMK1-DCAMKL Dere PK Dere08g1642 PF00069 Pkinase 2.2e-59 CL0016
CAMK_CAMK1-DCAMKL Dod PK Dod03g1723 PF00069 Pkinase 4.5e-58 CL0016
CAMK_CAMK1-DCAMKL Enph PK Enph3g0467 PF00069 Pkinase 7.4e-61 CL0016
CAMK_CAMK1-DCAMKL Eupl PK Eupl05g00043 PF00069 Pkinase 2e-57 CL0016
CAMK_CAMK1-DCAMKL Gabi PK Gabi1702g00001 PF00069 Pkinase 7.5e-57 CL0016
CAMK_CAMK1-DCAMKL Gabi PK Gabi2255g00021 PF00069 Pkinase 1.2e-25 CL0016
CAMK_CAMK1-DCAMKL Glsi PK Glsi14g0230 PF00069 Pkinase 6.9e-57 CL0016
CAMK_CAMK1-DCAMKL Gma PK Gma08g02088 PF00069 Pkinase 2e-55 CL0016
CAMK_CAMK1-DCAMKL Gma PK Gma15g02130 PF00069 Pkinase 1.3e-55 CL0016
CAMK_CAMK1-DCAMKL Gso PK Gso15g1872 PF00069 Pkinase 1.4e-55 CL0016
CAMK_CAMK1-DCAMKL Gso PK Gso8g1891 PF00069 Pkinase 2e-55 CL0016
CAMK_CAMK1-DCAMKL Lal PK Lal9g0650 PF00069 Pkinase 5e-57 CL0016
CAMK_CAMK1-DCAMKL Lan PK Lan8g1283 PF00069 Pkinase 9.8e-57 CL0016
CAMK_CAMK1-DCAMKL Lapu PK Lapu11g00088 PF00069 Pkinase 4.7e-56 CL0016
CAMK_CAMK1-DCAMKL Lasa PK Lasa4g01352 PF00069 Pkinase 1.2e-57 CL0016
CAMK_CAMK1-DCAMKL Lele PK Lele09g0138 PF00069 Pkinase 2.7e-56 CL0016
CAMK_CAMK1-DCAMKL Lele PK Lele10g0144 PF00069 Pkinase 1.1e-58 CL0016
CAMK_CAMK1-DCAMKL Lele PK Lele11g0134 PF00069 Pkinase 1.7e-44 CL0016
CAMK_CAMK1-DCAMKL Lele PK Lele12g1115 PF00069 Pkinase 1.1e-58 CL0016
CAMK_CAMK1-DCAMKL Lja PK Lja3g2555 PF00069 Pkinase 6.8e-59 CL0016
CAMK_CAMK1-DCAMKL Mal PK Mal5g1961 PF00069 Pkinase 5.1e-56 CL0016
CAMK_CAMK1-DCAMKL Mepo PK Mepo1g03301 PF00069 Pkinase 1.1e-55 CL0016
CAMK_CAMK1-DCAMKL Mesa PK Mesa29g03741 PF00069 Pkinase 1.1e-55 CL0016
CAMK_CAMK1-DCAMKL Mesa PK Mesa29g03745 PF00069 Pkinase 1.1e-55 CL0016
CAMK_CAMK1-DCAMKL Mesa PK Mesa30g03645 PF00069 Pkinase 1.3e-55 CL0016
CAMK_CAMK1-DCAMKL Mesa PK Mesa31g03515 PF00069 Pkinase 9.1e-56 CL0016
CAMK_CAMK1-DCAMKL Mibi PK Mibi01g1366 PF00069 Pkinase 1.1e-58 CL0016
CAMK_CAMK1-DCAMKL Mibi PK Mibi01g1368 PF00069 Pkinase 1.1e-58 CL0016
CAMK_CAMK1-DCAMKL Mtr PK Mtr8g1353 PF00069 Pkinase 1.1e-55 CL0016
CAMK_CAMK1-DCAMKL Mupr PK Mupr11760g00001 PF00069 Pkinase 9.2e-56 CL0016
CAMK_CAMK1-DCAMKL Phac PK Phac11g02454 PF00069 Pkinase 1e-55 CL0016
CAMK_CAMK1-DCAMKL Phco PK Phco9g02033 PF00069 Pkinase 1e-55 CL0016
CAMK_CAMK1-DCAMKL Pral PK Pral3579g00003 PF00069 Pkinase 1.3e-57 CL0016
CAMK_CAMK1-DCAMKL Prci PK Prci686g0003 PF00069 Pkinase 3.9e-61 CL0016
CAMK_CAMK1-DCAMKL Prci PK Prci686g0004 PF00069 Pkinase 5.7e-61 CL0016
CAMK_CAMK1-DCAMKL Prci PK Prci7g0837 PF00069 Pkinase 4.7e-61 CL0016
CAMK_CAMK1-DCAMKL Prci PK Prci7g0838 PF00069 Pkinase 6.9e-61 CL0016
CAMK_CAMK1-DCAMKL Psa PK Psa4g3295 PF00069 Pkinase 8.8e-09 CL0016
CAMK_CAMK1-DCAMKL Psa PK Psa4g3296 PF13499 EF-hand_7 3e-14 CL0220
CAMK_CAMK1-DCAMKL Pste PK Pste1g01222 PF00069 Pkinase 8.1e-40 CL0016
CAMK_CAMK1-DCAMKL Pte PK Pte16g00922 PF00069 Pkinase 7.1e-15 CL0016
CAMK_CAMK1-DCAMKL Pte PK Pte6g00430 PF00069 Pkinase 1.1e-55 CL0016
CAMK_CAMK1-DCAMKL Pumo PK Pumo10g02466 PF00069 Pkinase 2e-56 CL0016
CAMK_CAMK1-DCAMKL Pumo PK Pumo10g02575 PF00069 Pkinase 5.5e-57 CL0016
CAMK_CAMK1-DCAMKL Pvu PK Pvu11g1943 PF00069 Pkinase 9.9e-56 CL0016
CAMK_CAMK1-DCAMKL Rops PK Rops3g02435 PF00069 Pkinase 1.8e-57 CL0016
CAMK_CAMK1-DCAMKL Sebi PK Sebi192g00064 PF00069 Pkinase 9.2e-58 CL0016
CAMK_CAMK1-DCAMKL Sebi PK Sebi979g00002 PF00069 Pkinase 1.6e-59 CL0016
CAMK_CAMK1-DCAMKL Seca PK Seca3g09555 PF00069 Pkinase 2.7e-43 CL0016
CAMK_CAMK1-DCAMKL Seca PK Seca4g09697 PF00069 Pkinase 2e-45 CL0016
CAMK_CAMK1-DCAMKL Spst PK Spst11g00039 PF00069 Pkinase 1.1e-55 CL0016
CAMK_CAMK1-DCAMKL Ssu PK Ssu2g0374 PF00069 Pkinase 2.4e-41 CL0016
CAMK_CAMK1-DCAMKL Sto PK Sto4g2431 PF00069 Pkinase 1.1e-44 CL0016
CAMK_CAMK1-DCAMKL Stsc PK Stsc30253g00012 PF00069 Pkinase 2.1e-63 CL0016
CAMK_CAMK1-DCAMKL Stsc PK Stsc60969g00002 PF13499 EF-hand_7 1.2e-14 CL0220
CAMK_CAMK1-DCAMKL Stsc PK Stsc91101g00004 PF00069 Pkinase 5.9e-34 CL0016
CAMK_CAMK1-DCAMKL Tpr PK Tpr7g1525 PF00069 Pkinase 2.1e-56 CL0016
CAMK_CAMK1-DCAMKL Trre PK Trre15g01597 PF00069 Pkinase 2.5e-56 CL0016
CAMK_CAMK1-DCAMKL Trre PK Trre16g01632 PF00069 Pkinase 1.6e-56 CL0016
CAMK_CAMK1-DCAMKL Tsu PK Tsu08g01536 PF00069 Pkinase 1.5e-56 CL0016
CAMK_CAMK1-DCAMKL Vian PK Vian5g00393 PF00069 Pkinase 2.7e-53 CL0016
CAMK_CAMK1-DCAMKL Vifa PK Vifa4g00492 PF00069 Pkinase 1.6e-42 CL0016
CAMK_CAMK1-DCAMKL Vifa PK Vifa4g00494 PF00069 Pkinase 9.7e-59 CL0016
CAMK_CAMK1-DCAMKL Vimu PK Vimu5g00702 PF00069 Pkinase 2.7e-37 CL0016
CAMK_CAMK1-DCAMKL Vium PK Vium8980g00002 PF00069 Pkinase 1.3e-55 CL0016
CAMK_CAMK1-DCAMKL Vium PK Vium8980g00003 PF00069 Pkinase 3.7e-42 CL0016
CAMK_CAMK1-DCAMKL Viun PK Viun11g00397 PF00069 Pkinase 3.1e-59 CL0016
CAMK_CAMK1-DCAMKL Vivi PK Vivi234g00020 PF00069 Pkinase 4.9e-57 CL0016
CAMK_CAMK1-DCAMKL Vivi PK Vivi7g04903 PF00069 Pkinase 4e-57 CL0016
CAMK_CAMK1-DCAMKL Vvi PK Vvi13g1033 PF00069 Pkinase 3.6e-59 CL0016