Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0493 . . . . . . . Aed11g1910 . . . . . . . . . . . . . . . . . . . . . Car08g00058 . Cca06g02002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g2847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra11g0074
Vvi3g0494 . . . . . . . Aed11g1909 . . . Ahy15g1273 . Aip05g01335 . . . . Apr3g1673 . . . . . . . . . Car06g01711 . . Cca06g02001 . . . Dod02g1350 . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02462 . . . . . . . . . . . . Mal7g3385 . . . . . . . Mtr4g2820 . . . . Phco8g00029 . . Psa7g2846 . . . . . . . . . . Pvu3g3038 . . . . . Spst3g02162 . Ssu2g3112 . . Tpr4g1862 . . . Tsu02g03393 . . . . . . Vimu11g01083 . . . . . .
Vvi3g0495 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0496 . . . . . . . . . . . Ahy15g1272 . Aip05g01334 . . . Amo15g0072 . . . . . . . . . . . . . . . . . Dod02g1348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0497 . . . . . . . . . . Ahy20g1342 . Aip10g01492 . . . Amo20g1390 . Apr3g1675 . . . . . . . . . Car06g01710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02461 . . . . . . . . . . . . Mal7g3386 . . . . . . . Mtr4g2821 . . . . Phco8g00030 . . . . . . . . . . . . . Pvu3g3037 . . . . . Spst3g02163 . . . . Tpr4g1861 . . . Tsu02g03395 . . . . . . Vimu11g01082 . . . . . .
Vvi3g0498 . . . . . . . Aed11g1908 . . Ahy20g1339 . Aip10g01489 . . . . . . . . . . . . . . . . . . Cca06g01999 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g3111 . . . . . . . . . . . . . . . . . . . .
Vvi3g0499 . . . . . . . . . . Ahy20g1338 . Aip10g01488 . . . . . . . . . . . . . . . Car06g01709 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02460 . . . . . . . . . . . . . . . . . . . . . . . . . Phco8g00031 . . . . . . . . . . . . . Pvu3g3036 . . . . . Spst3g02164 . . . . . . . . . . . . . . . Vimu11g01081 . . . . . .
Vvi3g0500 . . . . . . . . . . Ahy20g1335 . Aip10g01486 . . . Amo20g1363 . . . . . . . . . . . . . . Cca06g01998 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0501 . . . . . . . . . . Ahy20g1679 . Aip10g01952 . . . . . . . . . . . . . Bva13g00284 Bva14g00357 Car06g01708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02458 . . . . . . . . . . . . . . . . . . . . . . . . . Phco8g00032 . . . . . . . . Pte3g01836 . . . . Pvu3g3035 . . . . . Spst3g02165 . . . . . . . . . . . . . . . Vimu11g01079 . . . . . .
Vvi3g0502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Ahy Ahy20g1679 Chr20 73641265 73642559 +
Aip Aip10g01952 Chr10 69520731 69522001 +
Lapu Lapu3g02458 Chr3 46495256 46496917 +
Phco Phco8g00032 Chr8 321771 322694 -
Pte Pte3g01836 Chr3 29197989 29199337 -
Pvu Pvu3g3035 Chr3 52031897 52035256 +
Spst Spst3g02165 Chr3 60356600 60357556 +
Vimu Vimu11g01079 Chr11 11473499 11475603 +
Lapu Lapu3g02460 Chr3 46513729 46514679 +
Phco Phco8g00031 Chr8 315846 316859 -
Pvu Pvu3g3036 Chr3 52036637 52037678 +
Spst Spst3g02164 Chr3 60348734 60349684 +
Vimu Vimu11g01081 Chr11 11498235 11498651 +
Lapu Lapu3g02461 Chr3 46522935 46524232 +
Phco Phco8g00030 Chr8 310689 311639 -
Pvu Pvu3g3037 Chr3 52045794 52047139 +
Spst Spst3g02163 Chr3 60310484 60311434 +
Vimu Vimu11g01082 Chr11 11498856 11499299 +
Lapu Lapu3g02462 Chr3 46529128 46530416 +
Phco Phco8g00029 Chr8 303325 304766 -
Pvu Pvu3g3038 Chr3 52047623 52048921 +
Spst Spst3g02162 Chr3 60233839 60234759 +
Vimu Vimu11g01083 Chr11 11512721 11517369 +
Vvi Vvi3g0493 Chr3 4265022 4265990 -
Aed Aed11g1910 Chr11 21962917 21963870 +
Car Car08g00058 Chr08 528042 529051 +
Cca Cca06g02002 Chr06 35230639 35232111 +
Psa Psa7g2847 Chr7 204065528 204067342 -
Vra Vra11g0074 Chr11 545205 546351 -
Vvi Vvi3g0494 Chr3 4267142 4268113 -
Aed Aed11g1909 Chr11 21956005 21956964 +
Ahy Ahy15g1273 Chr15 20237642 20238801 -
Aip Aip05g01335 Chr05 19546037 19547032 -
Apr Apr3g1673 Chr3 32299478 32300766 -
Car Car06g01711 Chr06 16870926 16872280 +
Cca Cca06g02001 Chr06 35210704 35212002 -
Dod Dod02g1350 Chr02 16165465 16166968 -
Lapu Lapu3g02462 Chr3 46529128 46530416 +
Mal Mal7g3385 Chr7 98663830 98664795 -
Mtr Mtr4g2820 Chr4 41876880 41878116 -
Phco Phco8g00029 Chr8 303325 304766 -
Psa Psa7g2846 Chr7 203931313 203932865 +
Pvu Pvu3g3038 Chr3 52047623 52048921 +
Spst Spst3g02162 Chr3 60233839 60234759 +
Ssu Ssu2g3112 Chr2 92955574 92956647 +
Tpr Tpr4g1862 Chr4 19499827 19501276 -
Tsu Tsu02g03393 Chr02 37992571 37993542 -
Vimu Vimu11g01083 Chr11 11512721 11517369 +
Vvi Vvi3g0495 Chr3 4270839 4271231 +
Vvi Vvi3g0496 Chr3 4272814 4276086 -
Ahy Ahy15g1272 Chr15 20230638 20231945 +
Aip Aip05g01334 Chr05 19539441 19540556 +
Amo Amo15g0072 Chr15 2434851 2437438 +
Dod Dod02g1348 Chr02 16150519 16151485 +
Vvi Vvi3g0497 Chr3 4277374 4278276 -
Ahy Ahy20g1342 Chr20 28295284 28296801 -
Aip Aip10g01492 Chr10 26775870 26779848 -
Amo Amo20g1390 Chr20 30240682 30242000 +
Apr Apr3g1675 Chr3 32316378 32317729 -
Car Car06g01710 Chr06 16860395 16861645 +
Lapu Lapu3g02461 Chr3 46522935 46524232 +
Mal Mal7g3386 Chr7 98670746 98671702 -
Mtr Mtr4g2821 Chr4 41881796 41883157 -
Phco Phco8g00030 Chr8 310689 311639 -
Pvu Pvu3g3037 Chr3 52045794 52047139 +
Spst Spst3g02163 Chr3 60310484 60311434 +
Tpr Tpr4g1861 Chr4 19496986 19498441 +
Tsu Tsu02g03395 Chr02 37996387 37997884 -
Vimu Vimu11g01082 Chr11 11498856 11499299 +
Vvi Vvi3g0498 Chr3 4278679 4279584 -
Aed Aed11g1908 Chr11 21950320 21951339 -
Ahy Ahy20g1339 Chr20 28096912 28098128 -
Aip Aip10g01489 Chr10 26619279 26620876 -
Cca Cca06g01999 Chr06 35196960 35198314 +
Ssu Ssu2g3111 Chr2 92931697 92932674 +
Vvi Vvi3g0499 Chr3 4280170 4281072 -
Ahy Ahy20g1338 Chr20 28080352 28081724 -
Aip Aip10g01488 Chr10 26603640 26604974 -
Car Car06g01709 Chr06 16848353 16851382 +
Lapu Lapu3g02460 Chr3 46513729 46514679 +
Phco Phco8g00031 Chr8 315846 316859 -
Pvu Pvu3g3036 Chr3 52036637 52037678 +
Spst Spst3g02164 Chr3 60348734 60349684 +
Vimu Vimu11g01081 Chr11 11498235 11498651 +
Vvi Vvi3g0500 Chr3 4282826 4283767 -
Ahy Ahy20g1335 Chr20 27973167 27974532 -
Aip Aip10g01486 Chr10 26524605 26526088 -
Amo Amo20g1363 Chr20 29317286 29318293 -
Cca Cca06g01998 Chr06 35174546 35175649 -
Vvi Vvi3g0501 Chr3 4284150 4285055 -
Ahy Ahy20g1679 Chr20 73641265 73642559 +
Aip Aip10g01952 Chr10 69520731 69522001 +
Bva Bva13g00284 Chr13 1340120 1341274 +
Bva Bva14g00357 Chr14 1769066 1770262 +
Car Car06g01708 Chr06 16842449 16843723 +
Lapu Lapu3g02458 Chr3 46495256 46496917 +
Phco Phco8g00032 Chr8 321771 322694 -
Pte Pte3g01836 Chr3 29197989 29199337 -
Pvu Pvu3g3035 Chr3 52031897 52035256 +
Spst Spst3g02165 Chr3 60356600 60357556 +
Vimu Vimu11g01079 Chr11 11473499 11475603 +
Vvi Vvi3g0502 Chr3 4286954 4287862 -
Pte Pte3g01836 Chr3 29197989 29199337 -