Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g0956 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0957 . . . . . . . . . . Ahy17g2457 . Aip07g02622 . . . Amo17g2318 . . Apr5g1555 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0958 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0959 . . . . . . . . . . . . Aip07g02621 . . . Amo17g2316 . . Apr5g1556 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0960 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0961 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0962 . . . . . . . . . . Ahy17g2453 . Aip07g02619 . . . Amo17g2314 . . . . . . . . . . . . . . Cca07g00404 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra5g1545
Vvi18g0963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cca07g00403 . . . . . . . . Gma04g00334 . . . Gso4g0311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra5g1546
Vvi18g0964 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cca07g00402 . . . . . . . . . Gma06g00319 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vvi Vvi18g0956 Chr18 9756283 9758781 +
Vvi Vvi18g0957 Chr18 9762307 9784629 +
Ahy Ahy17g2457 Chr17 117022560 117024974 -
Aip Aip07g02622 Chr07 108618123 108620173 -
Amo Amo17g2318 Chr17 117586844 117589295 -
Apr Apr5g1555 Chr5 19377839 19381201 +
Vvi Vvi18g0958 Chr18 9789032 9791275 +
Vvi Vvi18g0959 Chr18 9794763 9797055 +
Aip Aip07g02621 Chr07 108587692 108589391 -
Amo Amo17g2316 Chr17 117573138 117575334 -
Apr Apr5g1556 Chr5 19380279 19384601 +
Vvi Vvi18g0960 Chr18 9802985 9804462 -
Vvi Vvi18g0961 Chr18 9804817 9807375 +
Vvi Vvi18g0962 Chr18 9816726 9817148 +
Ahy Ahy17g2453 Chr17 116986078 116988171 -
Aip Aip07g02619 Chr07 108560437 108567459 -
Amo Amo17g2314 Chr17 117545842 117552786 -
Cca Cca07g00404 Chr07 5352987 5358753 -
Vra Vra5g1545 Chr5 22049791 22051659 +
Vvi Vvi18g0963 Chr18 9817239 9818372 +
Cca Cca07g00403 Chr07 5334977 5337532 -
Gma Gma04g00334 Chr04 2852982 2857056 -
Gso Gso4g0311 Chr4 2809105 2811170 -
Vra Vra5g1546 Chr5 22053222 22055476 +
Vvi Vvi18g0964 Chr18 9819460 9820719 +
Vvi Vvi18g0965 Chr18 9827989 9838612 +
Cca Cca07g00402 Chr07 5312596 5315939 -
Gma Gma06g00319 Chr06 2779625 2782820 -