Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1250 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1251 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1252 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1253 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1255 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1256 . . . Aed5g0903 . . . . . . . . Arst3g01940 . . Bva07g00172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01380 . . Pste1g03526 . . . Spst11g00928 Ssu3g2161 . . . . . . . . . Vra2g1198
Pvu11g1257 . . . Aed5g0902 . . . . . . . . Arst3g01773 . . . . . . Dod03g2087 . . . . . . . . . . . . . Lasa7g01168 . . . . . . . . . . . Phco9g01383 . . . . . . Spst11g00927 . . . . . . . . . . Vra2g1080
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1248 Chr11 21235141 21236906 -
Pvu Pvu11g1249 Chr11 21239427 21240426 +
Pvu Pvu11g1250 Chr11 21248480 21250253 +
Pvu Pvu11g1251 Chr11 21274077 21275092 -
Pvu Pvu11g1252 Chr11 21306974 21307974 +
Pvu Pvu11g1253 Chr11 21316423 21317872 -
Pvu Pvu11g1254 Chr11 21317928 21318609 +
Pvu Pvu11g1255 Chr11 21318621 21319128 +
Pvu Pvu11g1256 Chr11 21395529 21396848 +
Aed Aed5g0903 Chr5 6872808 6874517 -
Arst Arst3g01940 Chr3 22887264 22889619 -
Bva Bva07g00172 Chr07 2900585 2902170 +
Phco Phco9g01380 Chr9 22281562 22282847 +
Pste Pste1g03526 Chr1 16628247 16629868 +
Spst Spst11g00928 Chr11 33491309 33496749 +
Ssu Ssu3g2161 Chr3 70451288 70458781 +
Vra Vra2g1198 Chr2 16242365 16247110 -
Pvu Pvu11g1257 Chr11 21506429 21507304 -
Aed Aed5g0902 Chr5 6868525 6870071 -
Arst Arst3g01773 Chr3 20687807 20692100 -
Dod Dod03g2087 Chr03 49277664 49278002 -
Lasa Lasa7g01168 Chr7 214957172 214961501 +
Phco Phco9g01383 Chr9 23090245 23091897 -
Spst Spst11g00927 Chr11 33462533 33463681 -
Vra Vra2g1080 Chr2 12097019 12098309 +
Aed Aed5g0903 Chr5 6872808 6874517 -
Vra Vra2g1198 Chr2 16242365 16247110 -