Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1405 ATGGCGGATCAGTACTCTTGTGAAGGTTCTAGTTTGAGCCCAGTTTCTGGAGACTGCTCGGAATCTACTGTTGAGCTCAATGTCAAGACTTTAGATTCACGGATCCACAGCTTTCATGTGGATAAAAATTTGCCAGTCTCATTGTTCAAGGAGAAAATAGCGAATGAAATTGGTGTTCCGGTTGAGCAACAACGACTAATTTTTAGAGGAAAGGTCTTAAAGGACGATCAACTTCTTGCTGAGTATCATGTGGAAAATGGACATACATTACATTTAGTTGCAAGGGACCCAACCCAATCACAACCTTCATCAGGTCAAAGCTCTGGAGAGACTAATGGGAATAATGGTAGTCGAGGAAATGATGCTAATGCTGGTGGCCCTCGTGCTCGTGTTGGGCAAATTTCACATAGTGTAGTGCTTGGGACCTTTAACGTTGGAGAGCAAGCTGAAGGGATTGTACCAGACCTAACTCGGGTTATTGGGGCAGTTTTGAATTCTTTTGGTATTGGAAGCCAAACCACCAACACTGCTACAGGTGGTGCACAACCAAACACACAGTCCAATGCTCCTGGTCAGGCTTCTCAGGGAATTGAAGTAGATGGGACACATGGTAATGCCAATGGTCAGAGACAAGAAGGAAACCAGGCACAGCCTAGTCAACCATTCCAATCTCTGCCTCAAGTTATGCAATTTCCTGTACCAGGAGGTGCAGGACCTGCTCCTCAAATTCAGGTTCCAATTCCTGATTCTCTGCACACACTTTCAGAGTTCATGAATCGCATGGGATTGTCGTTGTCACATAATGTGTATCAGCCAAATTCATCACCCACCAATGCAGATATACCAAGAGTGGAATTACCTTCCAACTCACGAGGACTGCCAACACCCGAAGCATTAAGCATTGTTATGCGTCAGGCAGAGAGGCTTCTCAGTGGCAATGCAGTTGCTGCTCTATCTCACATTGCAGGACGTGTGGAGCAAGAGGGAGCTTCAACTGATCCTACTATAAGGGGTGAAATTCAGACAGAAGCAATGCAAGTAGGGCTTGCAATGCAACATTTAGGTGTGCTCCTTCTAGAGCTTGGTCGTACAATTTTGACATTGCGAATGGGACAGTCTCCTGATGAATCTTCTGTGAATGCTGGGCCTGCAGTTTACATATCTCCATCAGGGCCTAATCCTATAATGGTTCAGCCCTTTCCTCTTCAAACCAGCTCTTTCTTTGGTGGTTCAACTGTTCCTCAATCAAATCCTCCTGCTGGTCCTGGAAATGCGCCAAGGCACATAAACATTCACATACATGCTGGCACATCACTTCCACCTATTGTTTCAGCAGCTGGTACCAGGGCAGGAAATGGGGATGGAATGCAGGGAGAACGTGCTAATGGAAATGTTTCAGCACAATCAGATGCTTCTATTTCACAGGCACCTTCCGACTCTGGTGCACTATCCTCCGTTATAGCTGAAGTCAATTCACGGATCAGAAATTTGGTTGATAACATGCGGGGGGGAAACCAGGTTCCATCAGGCCAAGCAGGGAGTTCAACTGTTCAGAATATGTCTACTGGATCTGGTCCTGGTAATGATGTAGGGAGTGATCAGCTGAAAAACATGGCAGTCGCAGGAGCCAGGGAAACCAGCCTACCCTCAGACACATGCATCCCTGGAACTGATGGTCATACGTCACAACCTGAACACCACCAAATGAATAATAATCAGGATAAAAGAGGTGTTTCACAGTCAAAAGATGTACCATCAACTTGTGCTGTTGAAGGCTCTTTTAGCTGCTCAAGTGGAAGTGATGAAGCTACAAGTGGTCCAGCAGATGCTTCAGATGATGCTCCAAGATCAAGCCAGAGGCAGGATATTCCTGAGGAAGCCAAAGCTGTTCCACTTGGATTAGGGATGGGAGGTTTGCAACTTAAGAAGCGTAGTAAGCAGCCAAAATCACAAGGCAAGAACAATGATTGTGGAACTTCTAGTGTTCCTTCTGTCAATCAGAATCAACGCACTATGACAAGTGCCCAGCAGGTTTTGCAGTCTCTTGCCTCTCGTGGTTCGACAGCAAATAGGACGGATGCAAATTGCCCACCCTCGCAGTTTCTTTCTTCTCGTAGTTTCACAGCAAATAGGATGGATGTTAATCGCCCACCCTCACACTTTCTTGCCTCTCGTAGTTTCACAGCAAATAGGATGGATGCAAGTGGTCCACCCTCAGGGCAACCATTGCATGTCCTTGGCCAGGTCAGGGAGGGTATGTCATCAGGAGGTCAAGGGCTTGCAGAGCAGTCTGGGGCTGGTTCTCCTGATGTCTTGAGTAATATGCTGCAACAACTCTCTCAAAACCCATTAATGATGAATACAGTCAATCAAATCGCTCAACAGGTTGATGGCCAAGAACTTGAAAGCATGTTTTCTGGGCTAGGGAGAGGCCAAGGTGGAGGCATTGATCTGTCAAGGATGGTTCAACAAATGATGCCAATTGTTAGTCGCGCTCTCAGCAGTGGGCCAAACCGTGGAGAACTATTCCATGGTGTAGGATCTGAGCCCCAGCCACAGCACAGTGAGAGAAGGCCTAGCAGAGGTGACAAACCAGATGTTCAAAATTCTCAGACTGACCTTCGAGAAGTAGCTGAAAGCATTGAACGCCAAATTCCACCCCAAGATATTTTCCGCTCTGTAGCTGAAAATGCAGTTCAACTATATGCTAATGGAACTGGTCCAGAGGGGTTGTTGGATGTGTTGTGTAGTGATGAACATCTTGCCACAGAGTTTATGGAGGTGCTGCAGCGTGATGTATGCAACCGACTGCATGGGAAATCTGGGGCTAAGGACTGA 2838 0.4669 MADQYSCEGSSLSPVSGDCSESTVELNVKTLDSRIHSFHVDKNLPVSLFKEKIANEIGVPVEQQRLIFRGKVLKDDQLLAEYHVENGHTLHLVARDPTQSQPSSGQSSGETNGNNGSRGNDANAGGPRARVGQISHSVVLGTFNVGEQAEGIVPDLTRVIGAVLNSFGIGSQTTNTATGGAQPNTQSNAPGQASQGIEVDGTHGNANGQRQEGNQAQPSQPFQSLPQVMQFPVPGGAGPAPQIQVPIPDSLHTLSEFMNRMGLSLSHNVYQPNSSPTNADIPRVELPSNSRGLPTPEALSIVMRQAERLLSGNAVAALSHIAGRVEQEGASTDPTIRGEIQTEAMQVGLAMQHLGVLLLELGRTILTLRMGQSPDESSVNAGPAVYISPSGPNPIMVQPFPLQTSSFFGGSTVPQSNPPAGPGNAPRHINIHIHAGTSLPPIVSAAGTRAGNGDGMQGERANGNVSAQSDASISQAPSDSGALSSVIAEVNSRIRNLVDNMRGGNQVPSGQAGSSTVQNMSTGSGPGNDVGSDQLKNMAVAGARETSLPSDTCIPGTDGHTSQPEHHQMNNNQDKRGVSQSKDVPSTCAVEGSFSCSSGSDEATSGPADASDDAPRSSQRQDIPEEAKAVPLGLGMGGLQLKKRSKQPKSQGKNNDCGTSSVPSVNQNQRTMTSAQQVLQSLASRGSTANRTDANCPPSQFLSSRSFTANRMDVNRPPSHFLASRSFTANRMDASGPPSGQPLHVLGQVREGMSSGGQGLAEQSGAGSPDVLSNMLQQLSQNPLMMNTVNQIAQQVDGQELESMFSGLGRGQGGGIDLSRMVQQMMPIVSRALSSGPNRGELFHGVGSEPQPQHSERRPSRGDKPDVQNSQTDLREVAESIERQIPPQDIFRSVAENAVQLYANGTGPEGLLDVLCSDEHLATEFMEVLQRDVCNRLHGKSGAKD* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1405 945 MobiDBLite consensus disorder prediction 651 701 - -
Vvi9g1405 945 MobiDBLite consensus disorder prediction 500 701 - -
Vvi9g1405 945 MobiDBLite consensus disorder prediction 174 227 - -
Vvi9g1405 945 MobiDBLite consensus disorder prediction 500 531 - -
Vvi9g1405 945 MobiDBLite consensus disorder prediction 96 129 - -
Vvi9g1405 945 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 12 944 - -
Vvi9g1405 945 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vvi9g1405 945 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vvi9g1405 945 SMART ubq_7 24 95 IPR000626 GO:0005515
Vvi9g1405 945 MobiDBLite consensus disorder prediction 854 871 - -
Vvi9g1405 945 MobiDBLite consensus disorder prediction 459 482 - -
Vvi9g1405 945 Pfam Ubiquitin family 26 95 IPR000626 GO:0005515
Vvi9g1405 945 MobiDBLite consensus disorder prediction 96 121 - -
Vvi9g1405 945 MobiDBLite consensus disorder prediction 833 871 - -
Vvi9g1405 945 MobiDBLite consensus disorder prediction 550 605 - -
Vvi9g1405 945 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vvi9g1405 945 SUPERFAMILY Ubiquitin-like 16 112 IPR029071 -
Vvi9g1405 945 Gene3D - 16 109 - -
Vvi9g1405 945 FunFam Large proline-rich protein BAG6 16 109 - -
Vvi9g1405 945 MobiDBLite consensus disorder prediction 443 482 - -
Vvi9g1405 945 MobiDBLite consensus disorder prediction 174 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1405 Vvi-Chr9 22970912 22991909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1405 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 1.22e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1405 - - vvi:100263131 1835.08