Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1403 ATGGATTCTAATATTATCATGGAGAGTGCAATCGTAGAGCCTCGTGATGATATGGAATTTGAATCACATGAGGCTGCATATGCATTTTATAAAGAATATGCTAAATCTGTGGGGTTTGGTACTGCTAAGTTGAGCAGTCGTCGTTCTAGAGCATCAAGGGAATTTATTGATGCAAAATTTTCATGCATAAGATATGGAAACAAGCAGCAGTCTGATGATGCCATTAATCCCCGACCTTCTCCAAAGATAGGTTGTAAAGCAAGCATGCATGTGAAGAGAAAGCCAAATGGAAAATGGTATGTCTATACTTTTGTAAAGGAGCATAATCATGAGCTTTTACCTGCCCAAGCACATTTCTTTCGAAGCCACAGGAGTACTGATCCACTTAAGAATGACGCTCGGATACGAAGAAGGAAGATCTTAGCTGCAGGGTCCAAACAATTCAGTGCTTATCAAAACATTGATTGTATAGAGAATTATATGAGAAATCAGCATGATAAAGGGCGGAGTTTGACTTTAGAAGTTGGGGATGCTCAAGTGCTGCTTGAGCTTTTTATGCATATGCAGGAAGAGAATCCAAAGTTCTTTTATGCAGTGGACTTAAATGAAGAGCATCGATTGAGAAATGTTTTCTGGGTTGATGCTAAAGGCATGGATGACTATACTAATTTTGGTGATGTAGTTTCTTTTGACACTACATATTTCTCAGACAAGTATAAAATACCATTAGTTCTTTTTATTGGAGTGAACCATCACATTCAACCCACATTGCTGGGTTGTGCATTGATTGCAGATGAGACGGTATATACTTTTCTTTGGCTAATGCAAACATGGCTTATATCAATGGGGGGACAAGCTCCACGAGTGATACTGACTGAACAAAACAATGCCATGAAAGCAGCTATTGCAGCGGTCTTTTCAGACACACGTCATTGTTTTTGTTTGTGGCATATATTAGAAAAAATCCCTCGAAGGCTTGATTATTTGACTGTGTGGCATGATAGCTTTATGGTAAAATTTAAAAAATGTATTTATCAGTCATATACGGAAGAACAATTTGAAAATAGATGGTGGAAATTAATTGACAGATTTAACCTTAGAGAGGATGAATGGGTTCAGTTACTGTATGAAGATCGCAGGCAATGGGCACCTACATTTATGAGAGATATATCTTTTGCTGGGTTGTCTCCACCTTTACGATCTGAAAGTTTGAACTCCTGGTTTGACAAATATGTCCATGGGGAAACTTCATTGCGAGAATTTATTGAACAATACAAACTTGTGCTGGAAGATAGGTATGAAGAGGAAGCCAAATCAGATTTTGATGCATGGCATGAAACACCCGAGTTGAAGTCTCCATCTCCTTTTGAAAAACAAATGTCACTAGTATACACACAAGAAATATTCAAGAAATTCCAAGTTGAGGTTTTGGGAGCAGCTGCTTGTCATCTCAAGAAAGAAAATGAAGATGAGACAACTGTTGCATACACTGTCAGAGACATTGAAGATGATCAGAATTTCAAAGTGGACTGGAATGAATCAAAATCAGATATTTATTGTTCATGCCGTTCATTTGAATACAAAGGTTATCTCTGTAGGCATGCTATTGTTGTTCTCCAAATGTCTGGTGTTTTTCGCATCCCATCTAAGTATATTTTGCAACGGTGGACAAATGCTGCTACAAGTAGGCATACCATCAGTGAAAAATTGGATGAGGTGCAATCTAAGGTCCGCCGTTATGATGATTTATGTCGACGAGCCATAATATTGGGTGAAGAAGGATCTCTTTCTCAAGAGAGTTACAATATTGCTCTATGTGCCATAAAAGAAGCTCTAAAGCAATGTGCAAGTTTGAATAACTCTGCAGAGACTGATGCAAGACCCAACAACTTGGTTGTTCATGCTATTTGTGGAAGTGAGGAAGAGAATCAAGACAGCAACACCATATCTAAAGACAAGGTACCCAATCCGAAACTGACCAGCACAAACAAGATTCCTAAGAGAGCTGAGGCTAGGAAGGAGAAGGCTAGTAATGAAAATAATGCAAGCAAAAAAGGAAAGGTACCTTTGGAGGCGGAAGTGATGAGCGTTGGAACACAAGACAACTTTCATCAAATGCAGGAATTATCCAACATGAGGCCAGCACAGTTTCATAATGTAATGCCAGCACAGTTCCAAAATATGGTGCCAGCAGTGTTTCAGAATGTCATGACAACACCATTTCATAATGTGGCTTCAACAAATTTGCACGAGAAGCGTATCCCTCGTTAG 2271 0.3888 MDSNIIMESAIVEPRDDMEFESHEAAYAFYKEYAKSVGFGTAKLSSRRSRASREFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRKPNGKWYVYTFVKEHNHELLPAQAHFFRSHRSTDPLKNDARIRRRKILAAGSKQFSAYQNIDCIENYMRNQHDKGRSLTLEVGDAQVLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGMDDYTNFGDVVSFDTTYFSDKYKIPLVLFIGVNHHIQPTLLGCALIADETVYTFLWLMQTWLISMGGQAPRVILTEQNNAMKAAIAAVFSDTRHCFCLWHILEKIPRRLDYLTVWHDSFMVKFKKCIYQSYTEEQFENRWWKLIDRFNLREDEWVQLLYEDRRQWAPTFMRDISFAGLSPPLRSESLNSWFDKYVHGETSLREFIEQYKLVLEDRYEEEAKSDFDAWHETPELKSPSPFEKQMSLVYTQEIFKKFQVEVLGAAACHLKKENEDETTVAYTVRDIEDDQNFKVDWNESKSDIYCSCRSFEYKGYLCRHAIVVLQMSGVFRIPSKYILQRWTNAATSRHTISEKLDEVQSKVRRYDDLCRRAIILGEEGSLSQESYNIALCAIKEALKQCASLNNSAETDARPNNLVVHAICGSEEENQDSNTISKDKVPNPKLTSTNKIPKRAEARKEKASNENNASKKGKVPLEAEVMSVGTQDNFHQMQELSNMRPAQFHNVMPAQFQNMVPAVFQNVMTTPFHNVASTNLHEKRIPR* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1403 756 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 616 IPR031052 GO:0006355
Vvi9g1403 756 MobiDBLite consensus disorder prediction 642 663 - -
Vvi9g1403 756 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Vvi9g1403 756 ProSiteProfiles Zinc finger SWIM-type profile. 507 543 IPR007527 GO:0008270
Vvi9g1403 756 Pfam MULE transposase domain 227 320 IPR018289 -
Vvi9g1403 756 MobiDBLite consensus disorder prediction 665 681 - -
Vvi9g1403 756 SMART 26again6 518 545 IPR006564 GO:0008270
Vvi9g1403 756 MobiDBLite consensus disorder prediction 642 687 - -
Vvi9g1403 756 Pfam SWIM zinc finger 507 541 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1403 Vvi-Chr9 22906936 22909838 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi9g1403 MULE 1.1e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1403 - - vvi:100251355 1533.08