Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1402 ATGGCAACAAATAGGTACATTTGTGAGGTGTGTCACAAGGGATTCCAGAGAGATCAAAACCTTCAGCTCCATAGAAGAGGGCACAACTTGCCATGGAAGCTAAAGCAAAGGTCAAACACAGAGGTTAAGAAGAGGGTGTATGTGTGTCCGGAGCCCAACTGCGTGCATCATGACCCAAGCCGGGCTCTTGGTGACTTGACTGGAATAAAGAAGCACTTCTGCAGAAAGCACGGAGAGAAGCGATGGAAGTGTGACAAGTGCTCAAAACGTTATGCTGTTCAATCAGACTGGAAGGCACATACAAAGATATGTGGAACCAGAGAATATCGCTGTGATTGTGGTACAATCTTCTCTAGGAAGGACAGTTTCGTAACACATAGAGCTTTCTGTGATGCATCGGCGGCGGAAAATTATAAGGCAAACCAGCAAATTGCTGCCGCAGGAGGAACGCCACACAACCAGCCTCAAGTGCTGTTCTCTTCTTCGATGCCCACTTCGGAATCAAGCTCTGGTGCAAACATGTCGATGAATTTGTCAGTTTTCAACGAGAATATTGACAATATAACAAGGCCGGCATCTCTGAATTCACCTGGGCTTACCATATCAAATAACTTAAATCAGATTTTCAATCCAACAACTTCACAGGAATGTTTTGGCTCAGGAATTGGATCGAATAATTCTCCCATGGGTATTGGCTCCACTTACACATCCGCAACTGCCTTGTTGCAAAAAGCTGCTGAAATGGGTGCTAAGATAAGTGACAATTCTATCGCCCCAGTTCTTTTCAGAGGATTTACCGGATACTCTGTTGGCAGTACGAACTCATGTGGGTCGGTCCAGGAGACTTCTTCAGTAATTAGTTGCAGTATGGGACCAGTTTCTGCAACAGCAAATGGTTTATATGTGGGAAATCAAGAAACATTTAACAAGGACTTGGATGCAGTAGATGTAAGACCTAGCTATGCTGTTTCTCACAGTGGGTTATTCGACTCTTCTTTGTTTATGCAGATGAAAAATCAAAACCCTGCAGACCGGTTGGAAGAACTATTCATGGGCGATGGTGAGAAAATGACAGTTGACTTCTTAGGGGTGGAGCCTACTGCATATCCAAGTAATGGGAAGAAAAGAAGCTATGATGGTAACTTTATGGGTTTGGAGTATTCAAACACACAGCAAAACCTTTAA 1185 0.4388 MATNRYICEVCHKGFQRDQNLQLHRRGHNLPWKLKQRSNTEVKKRVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKRWKCDKCSKRYAVQSDWKAHTKICGTREYRCDCGTIFSRKDSFVTHRAFCDASAAENYKANQQIAAAGGTPHNQPQVLFSSSMPTSESSSGANMSMNLSVFNENIDNITRPASLNSPGLTISNNLNQIFNPTTSQECFGSGIGSNNSPMGIGSTYTSATALLQKAAEMGAKISDNSIAPVLFRGFTGYSVGSTNSCGSVQETSSVISCSMGPVSATANGLYVGNQETFNKDLDAVDVRPSYAVSHSGLFDSSLFMQMKNQNPADRLEELFMGDGEKMTVDFLGVEPTAYPSNGKKRSYDGNFMGLEYSNTQQNL* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1402 394 Gene3D Classic Zinc Finger 60 141 - -
Vvi9g1402 394 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 373 IPR031140 -
Vvi9g1402 394 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Vvi9g1402 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Vvi9g1402 394 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Vvi9g1402 394 SMART c2h2final6 47 77 IPR013087 -
Vvi9g1402 394 SMART c2h2final6 6 28 IPR013087 -
Vvi9g1402 394 SMART c2h2final6 82 102 IPR013087 -
Vvi9g1402 394 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vvi9g1402 394 Gene3D Classic Zinc Finger 1 52 - -
Vvi9g1402 394 FunFam Zinc finger protein MAGPIE 2 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1402 Vvi-Chr9 22905014 22906281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1402 1 316 IDZ Gene Family AT3G50700 46.479 6.95e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi9g1402 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1402 - - vvi:100258126 812.372