Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1401 ATGAAACGATCAATTGAGGAAGACATCAGCACCACCATCGCCTCCACCACCACCACCAACATGAAGAAGCCCGTCTTCTTGACCAAAGCCCAGCGCGAACAGTTGGCCCTTCAACGTCGCCAGGAAGAAATCGCCGAACAGAAGCGCTGTGCTGAACAACAGCTACTCCAAGCCCGCTCCTCCTCCGCCAACAACTCCTCCCACACCGCCTCCACCAACAAACCCTCAGATCCCTCTCTGGACAGCCGCCACCACCGCTCTTCCAGAGACCGAGACCGGGATCGCGATCGCGACCGTGACCGTGATTCAGAGCGGAGAAACCGCGATCGGGAACGCGAGGAAGAGGCCAAGGTTCGGGGGCTCGCTCGCTTAGAGAAGCTAGCTGAGCGGGAGCGAGAGAAAGAGCTTGAATCCATCAAGGAACAGTACCTTGGATCCAAGAAACCTAAGAAAAGGGTTATTAAGCCTAGCGAGAAGTTCCGATTTTCCTTCGATTGGGAGAACACTGAAGACACCTCCCGCGACATGAATTCACTCTACCAAAACCCTCACGAGGCTCAGCTCTTGTTCGGAAGGGGGTTTCGTGCTGGCATGGATCGCCGTGAGCAGAAAAAGCTCGCCGCCAAGAACGAGAAAGAAATGAGAGAGGAGATTCGCAAGAAAGAGGGCGTTGAGGAGAGACCGGAGGAGGCTGCAGCTCAGAGGCAGAAGGAACAAGCCGCCGAATTGTATGATACTTTTGATATGAGAGTGGATCGCCACTGGACAGAAAAGAAGCTCGAGGAAATGACTGAGAGGGACTGGAGAATTTTTAGGGAGGATTTCAATGTATCTTACAAGGGCTCTAAGATTCCCCGCCCTATGAGGAGTTGGGTAGAGAGCAAATTGAGTCCTGAGCTGCTCAAGGCCGTGGAGAGGGCTGGCTATAAGACTCCTTCCCCTATTCAGATGGCAGCTATTCCTCTCGGACTGCAACAACGCGATGTGATTGGGATTGCTGAAACTGGTTCTGGTAAGACTGCTGCATTTGTGCTTCCCATGCTGACTTACATTTCTAGACTCCCTCCCATAAGCGAGGAGAATGAAGCTGAAGGGCCTTATGCTGTTGTAATGGCCCCTACGCGAGAACTTGCACAGCAGATTGAGGATGAAACTGTTAAGTTTGCCCATTATTTGGGTATCAAAGTGGTTTCTATTGTAGGTGGTCAGTCCATTGAAGAGCAAGGGTTTAGGATCAGGCAAGGGTGTGAGGTTGTAATTGCAACGCCTGGGCGTTTAATTGATTGCTTGGAGAGGCGTTATGCTGTTTTGAACCAATGCAATTATGTTGTTCTGGATGAGGCTGATCGCATGATTGACATGGGTTTTGAGCCACAAGTGGTGGGTGTTCTGGATGCAATGCCTTCAAGCAATTTGAAGCCAGAGAATGAAGATGAAGAGCTTGATGAGAAAAAGATATACCGGACCACTTATATGTTCAGCGCAACAATGCCACCAGCTGTGGAACGGCTTGCAAGGAAGTACCTAAGAAATCCTGTGGTTGTCACAATTGGCACTGCTGGAAAGGCCACTGATCTGATCACTCAGCATGTTATTATGGTGAAGGGATCAGAGAAAATGCCTAAGTTGCAGAAGTTGCTGGATGAACTTGGAGATAAGACAGCAATTGTGTTTATCAACACTAAAAAGTCTACAGATACTCTTGCCAAGGGTTTGGATAAGGCAGGCTACCGAGTGACAACTTTGCATGGTGGAAAGTCACAAGAGCAGAGGGAAATTAGCCTTGAAGGTTTTAGGACCAAGAGATATAATGTTTTGGTTGCAACAGATGTGGCTGGGCGTGGGATTGATATCCCTGATGTTGCTCATGTTATAAACTATGACATGCCTGGGAATATTGAGATGTACACGCATCGTATTGGACGGACGGGCCGTGCAGGGAAGACAGGGGTGGCCACTACATTCTTGACTCTGCATGATTCCGATGTCTTCTATGACCTCAAGCAGATGCTTATTCAAAGTAATAGTCCCGTGCCTCCCGAACTAGCAAGACATGAGGCTTCAAAATTCAAGCCAGGATCAATTCCTGACAGACCACCTAGACGCAATGACACAGTTTTTGCACACTGA 2130 0.4925 MKRSIEEDISTTIASTTTTNMKKPVFLTKAQREQLALQRRQEEIAEQKRCAEQQLLQARSSSANNSSHTASTNKPSDPSLDSRHHRSSRDRDRDRDRDRDRDSERRNRDREREEEAKVRGLARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREEIRKKEGVEERPEEAAAQRQKEQAAELYDTFDMRVDRHWTEKKLEEMTERDWRIFREDFNVSYKGSKIPRPMRSWVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKGSEKMPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1401 709 SMART helicmild6 566 647 IPR001650 -
Vvi9g1401 709 MobiDBLite consensus disorder prediction 684 709 - -
Vvi9g1401 709 MobiDBLite consensus disorder prediction 55 77 - -
Vvi9g1401 709 Coils Coil 201 227 - -
Vvi9g1401 709 MobiDBLite consensus disorder prediction 203 231 - -
Vvi9g1401 709 FunFam probable ATP-dependent RNA helicase DDX23 250 519 - -
Vvi9g1401 709 MobiDBLite consensus disorder prediction 677 709 - -
Vvi9g1401 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 668 IPR027417 -
Vvi9g1401 709 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 686 IPR001650 -
Vvi9g1401 709 Gene3D - 520 707 IPR027417 -
Vvi9g1401 709 Pfam Helicase conserved C-terminal domain 539 647 IPR001650 -
Vvi9g1401 709 FunFam probable ATP-dependent RNA helicase DDX23 520 708 - -
Vvi9g1401 709 Pfam DEAD/DEAH box helicase 314 504 IPR011545 GO:0003676|GO:0005524
Vvi9g1401 709 CDD DEADc_DDX23 300 516 - -
Vvi9g1401 709 SMART ultradead3 308 530 IPR014001 -
Vvi9g1401 709 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 444 452 IPR000629 -
Vvi9g1401 709 CDD SF2_C_DEAD 527 656 - -
Vvi9g1401 709 Gene3D - 250 519 IPR027417 -
Vvi9g1401 709 MobiDBLite consensus disorder prediction 78 118 - -
Vvi9g1401 709 MobiDBLite consensus disorder prediction 8 25 - -
Vvi9g1401 709 MobiDBLite consensus disorder prediction 55 118 - -
Vvi9g1401 709 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 289 317 IPR014014 GO:0003724
Vvi9g1401 709 Coils Coil 27 47 - -
Vvi9g1401 709 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 320 515 IPR014001 -
Vvi9g1401 709 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 226 686 - -
Vvi9g1401 709 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1401 Vvi-Chr9 22900698 22902827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1401 290 683 Eukaryotic Initiation Factors Gene Family AT1G72730 33.165 2.28e-62 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1401 K12858 - vvi:100263263 1239.56