Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1385 ATGGTTTTTCTCCCTTCTGAGACCATGAATCACCATAGTGTTCTATCTGCAAAACAAACAGAGTCTACTAAAGGTTTTACTCAGTCTTACTGTGCTGCAGTATCCCCAATTCATAACTTACTGAATGTCGAGTTAGAAGGTCAAAATTCATTCAAGAGTGATTGTTCATCTTCACATTCACGTTTTACTCAAACAGAATTACCTGGTCCCGCCAATTTCATGCAAGCATCTGTAGTTCAGCCCCAGAAGCTTTGCTCAAAATCTGGACCATATAGCTCTGTGTCTTCTGATACTGATGCTCAATATCCCAAATGCACATTTTCTCGTTCTTCTGTGTTTTGTACCAGCTTATACCTGTCATCTTCATCAAGCACTGAAACCCATCGACCACTTGGAAATCTTCCATTTCTTCCTCATCCATCAATGTCCTACCAGTCCATTTCTGCTGTTCATTCAACAAAAACTCCATTTTTGAGTGGGGATTCAAGCGGTTTATATGATGAGGGGAATTCAGAGGATATGATGAAAGGCTTTCTCAATTTGTCCAGTGATGCTTCAGATGAGAGTTTTCATGTTATGAATTGTGCAAGTGACAATATAACATTTTCAGAGCAATTGGAGTTGCAGTTTTTGTCTGATGAACTTGATATAGCTATAGCTGACAACGGAGAAAATCCCAGACTTGATGAAATATATGAAATGCCTCAAGATTCATCAACACCAGCCATGGCATTAGGACTGACAGTCAATCAAAATCATCAATCTGTTGCACCATCTACTGATGCTTCATCAGGTCAACCCTCTCCAGGGGCTGCTGCTGCACACAAGCCAAGAATGAGATGGACCCCTGAGCTCCATGAGCGTTTTTTAGAGGCTGTCAATAAGCTTGAGGGGGCTGAAAAGGCAACACCAAAGGGAGTATTAAAGCTTATGAATATTGAAGGTTTGACCATTTATCATGTGAAAAGCCACTTACAGAAATACCGGCTTGCTAAGTATATGCCAGAGCGAAAGGAAGACAAGAAGGCTTCTGGATCCGAAGAAAAGAAAGCTGCTTCAAGTAACAATGAAAGTGATGGAAGGAGAAAAGGGAACATTCAAATCACTGAGGCTTTGCGCCTGCAAATGGAAGTTCAAAAACAGCTTCACGAACAGCTTGAGGTGCAAAGGACTCTTCAGTTACGCATAGAGGAGCATGCAAGGTACTTGCATAAGATCTTGGAAGAACAACAGAAGGCTGGCAGTGCCTTGATCTCTCCTCCAAGCTTGTCATCACCGACTAGCCCTCACCCAGATTCTGAAAGGCAGCCTTCTTCTCCATCAGCTACCACCACTCTCCCCCAACCAGCAGAGTGCAAAGCTGATTCCTCATCACCTCCACCATCAAAGCACAAAGCTGCTACTGAAACTACCGACTCTGAGCAGCAAGCATGCTCGAAGAGATCCCGTCTTGAATCCAACCCAGAACCAGTTTCAGATGAGGCTGTGGTTGAAAATCCCAGCCAGTGA 1509 0.4327 MVFLPSETMNHHSVLSAKQTESTKGFTQSYCAAVSPIHNLLNVELEGQNSFKSDCSSSHSRFTQTELPGPANFMQASVVQPQKLCSKSGPYSSVSSDTDAQYPKCTFSRSSVFCTSLYLSSSSSTETHRPLGNLPFLPHPSMSYQSISAVHSTKTPFLSGDSSGLYDEGNSEDMMKGFLNLSSDASDESFHVMNCASDNITFSEQLELQFLSDELDIAIADNGENPRLDEIYEMPQDSSTPAMALGLTVNQNHQSVAPSTDASSGQPSPGAAAAHKPRMRWTPELHERFLEAVNKLEGAEKATPKGVLKLMNIEGLTIYHVKSHLQKYRLAKYMPERKEDKKASGSEEKKAASSNNESDGRRKGNIQITEALRLQMEVQKQLHEQLEVQRTLQLRIEEHARYLHKILEEQQKAGSALISPPSLSSPTSPHPDSERQPSSPSATTTLPQPAECKADSSSPPPSKHKAATETTDSEQQACSKRSRLESNPEPVSDEAVVENPSQ* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1385 502 Pfam Myb-like DNA-binding domain 278 329 IPR001005 -
Vvi9g1385 502 MobiDBLite consensus disorder prediction 413 502 - -
Vvi9g1385 502 MobiDBLite consensus disorder prediction 461 485 - -
Vvi9g1385 502 MobiDBLite consensus disorder prediction 254 278 - -
Vvi9g1385 502 SUPERFAMILY Homeodomain-like 275 330 IPR009057 -
Vvi9g1385 502 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 273 333 IPR017930 -
Vvi9g1385 502 MobiDBLite consensus disorder prediction 336 357 - -
Vvi9g1385 502 FunFam Myb family transcription factor 275 333 - -
Vvi9g1385 502 Gene3D - 275 334 - -
Vvi9g1385 502 MobiDBLite consensus disorder prediction 336 364 - -
Vvi9g1385 502 Pfam MYB-CC type transfactor, LHEQLE motif 366 413 IPR025756 -
Vvi9g1385 502 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 251 486 IPR044848 GO:0003700
Vvi9g1385 502 MobiDBLite consensus disorder prediction 415 452 - -
Vvi9g1385 502 NCBIfam myb-like DNA-binding domain, SHAQKYF class 276 331 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1385 Vvi-Chr9 22635762 22640508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1385 9 489 G2-like Transcription Factor Family AT3G13040 49.487 4.75e-133 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi9g1385 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1385 - - vvi:100244458 944.88