Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1380 ATGGCTGTGAGTCTTGTGACAACAATGCAACTGGCAAGAGTGGTAGTGGCCGCAGTGGGACCATTGGCGGCTGCTGTAATGCCTTGGAAGATAGGTAGGCATGGGTGGGCTGGGGGAAATTCCTGGTCATCTGAGCAAGCTCCTCCACCTCCCCCTGGTGCAAGTTCAAAAAATACTCATGCTAGTAGGAGCTCATCCAACAGTGGAAAAGGTGGTGGGAAGTCTGGCATGAGTGGATTAGCCATTGCTGGAGTAGTTTTGGGAAGTTTGCTGGTACTAGTTATTCTACTTGCTCTATTTTCAAGACGATCTTCTCCTCCTCCTTCACATTTTCTTGATGAAGAGAGGCTTAGCAATCATAGACCATTTACCCCGATTGTATCCCAGGAGTTATCCAATGACATGCATCCCACAAACTACAATGGTAATTTTCATTTACACCTGTACTTTAAGTCGTCGAACTCATCTAATTCAATGGATGTAAAGGCTTTGCAAAAATCTCCTTCTATTGGTCTTAAGCGTCCACCTTCTCTTAATGATTTGGCAAATCGCTTGAGTGTCAAAAGAAGTACTTCTATTCGTGCTACAGCTTATTCCTTGGCGGATTTACAGAGTGCCACTAGAAACTTTGCAACAGCCAGCCTTCTTGGTGAGGGATCTGTTGGGCGTGTTTATAAGGCAAAGTATGCTGACGGAAAGGTGTTGGCTGTAAAAAAGATAAGCTCCTCCTTTTTCCAAAGTGGCCAGAAGCAAGGTTTTCCTGAAGTTGTTTCAAGTGTCTCCAAGCTTCGCCATCCAAATATTGCTGAAATTGTTGGTTATTGTTCAGAACAAGGGCATAACATGTTAATGTATGAGTATTTCAGAAATGGCTCACTACATCAGTTCTTACACCTGTCAGATGATTTCAGCAGACCACTTACTTGGAACACCAGAGTCAAAATTGCTCTTGGCACAGCCCGGGCTATTGAGTACCTCCATGAGGTTTGCTCTCCACCCATGGTTCACAAGAACATCAAGTCTTCTAATATCTTGCTTGATGCTGAACTCAATCCCCATCTCTCTGACTATGGGTTTGCTGCTTGTCATCAGCATACGAGCCAAAACCTAGGGGTTGGATATAATGCTCCAGAATGCACAAAGCCTTTGGCTTATACGTTGAAGAGTGATGTTTATAGTTTTGGAGTAGTCATGTTGGAGGTAATGACAGGTCGGATGCCTTTTGACAGTTCAAGACCAAGATCGGAACAATGCCTTGTCCGATGGGCCACCCCACAGCTCCATGAAATTGATTCACTAGAACAAATGGTGGACCCTGCTTTGCGTGGTTTGTACCCTCCTAAGTCACTCTCTCGATTTGCAGATATCATTGCTCTCTGTGTACAGATGGAGCCTGACTTCCGGCCAGCCATGTCAGAGGTGGTGCAGAGTTTAGCTCGATTGATTCAAGGGGCTTCTCGTCGGATGGAAGACTTCAACTATTGA 1485 0.4505 MAVSLVTTMQLARVVVAAVGPLAAAVMPWKIGRHGWAGGNSWSSEQAPPPPPGASSKNTHASRSSSNSGKGGGKSGMSGLAIAGVVLGSLLVLVILLALFSRRSSPPPSHFLDEERLSNHRPFTPIVSQELSNDMHPTNYNGNFHLHLYFKSSNSSNSMDVKALQKSPSIGLKRPPSLNDLANRLSVKRSTSIRATAYSLADLQSATRNFATASLLGEGSVGRVYKAKYADGKVLAVKKISSSFFQSGQKQGFPEVVSSVSKLRHPNIAEIVGYCSEQGHNMLMYEYFRNGSLHQFLHLSDDFSRPLTWNTRVKIALGTARAIEYLHEVCSPPMVHKNIKSSNILLDAELNPHLSDYGFAACHQHTSQNLGVGYNAPECTKPLAYTLKSDVYSFGVVMLEVMTGRMPFDSSRPRSEQCLVRWATPQLHEIDSLEQMVDPALRGLYPPKSLSRFADIIALCVQMEPDFRPAMSEVVQSLARLIQGASRRMEDFNY* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1380 494 PANTHER OS01G0253100 PROTEIN 152 483 - -
Vvi9g1380 494 Gene3D Phosphorylase Kinase; domain 1 178 287 - -
Vvi9g1380 494 Pfam Protein tyrosine and serine/threonine kinase 214 478 IPR001245 GO:0004672|GO:0006468
Vvi9g1380 494 SUPERFAMILY Protein kinase-like (PK-like) 190 478 IPR011009 -
Vvi9g1380 494 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 178 287 - -
Vvi9g1380 494 ProSiteProfiles Protein kinase domain profile. 210 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1380 494 Gene3D Transferase(Phosphotransferase) domain 1 288 493 - -
Vvi9g1380 494 MobiDBLite consensus disorder prediction 38 74 - -
Vvi9g1380 494 MobiDBLite consensus disorder prediction 56 73 - -
Vvi9g1380 494 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 288 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1380 Vvi-Chr9 22579545 22589997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1380 37 491 Strubbelig Receptor Gene Family AT1G78980 59.188 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vvi9g1380 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1380 - - vvi:100254729 828.55