Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1347 ATGGTTCTTAGGAAAGGACCGGAGAAAAAGTTCCGTAGTGGGCCATGGAATGGATTAAGTTTTAATGGTCTTCCATTGATTACGAAGACATTTTTTAAATCTTCTTTGGTGGACAATGTAGATGAGTTCTACTATTCGTACGAGCTTGATGACAAATCGATTATAACAAGACTTACTCTGGATGAACTGCGAATCTACGTGCCTGCTGTTGAGCAAAACAACCAAGAAGTTGGATATTGTCTATTTGTGAGTACTTGGAAGGGTTTGTTCCAAAATCACAAGAGGAAGGAAAATTTCAAAATTGGACCAGTGGCTGCATTAGGAGAACACAATTGGACTGCCAAAAGGGAGAAAAATTTATGGAACTTGAAGGGGTCAAACTGCCTGACTTGTTGGAATTCTAGGTCAGCAATAACCCTTAAGAAATGTGAGGAGGAGTGCTTGAGGAACTGTTCTTGTACAACTTACACTAATTCAAATATTAGTGAGGGAAACAATGGATGCTTGATCTGGTTTAGGGATCCGATCGATATTCGAGAGTTCCATGAAGATAATAAGCAGAATATCTATATCGGAATGCCAACTTCAGAACTAGGACAAGAAATTGCAGTAAAAAGGCTTTCAAACAATTCAGGACAAGGCTTTCAAGAGTTCAAGAATGAAGTTATTTTGATTTCCAAACTTCAACATCGCAATCTTGTGAGGCTTTTGGGTTGTTTCGTTGAAGAAGAAATAATGCTCGTCTATTAG 750 0.384 MVLRKGPEKKFRSGPWNGLSFNGLPLITKTFFKSSLVDNVDEFYYSYELDDKSIITRLTLDELRIYVPAVEQNNQEVGYCLFVSTWKGLFQNHKRKENFKIGPVAALGEHNWTAKREKNLWNLKGSNCLTCWNSRSAITLKKCEEECLRNCSCTTYTNSNISEGNNGCLIWFRDPIDIREFHEDNKQNIYIGMPTSELGQEIAVKRLSNNSGQGFQEFKNEVILISKLQHRNLVRLLGCFVEEEIMLVY* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1347 249 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 249 - -
Vvi9g1347 249 ProSiteProfiles PAN/Apple domain profile. 114 194 IPR003609 -
Vvi9g1347 249 Pfam Protein tyrosine and serine/threonine kinase 197 248 IPR001245 GO:0004672|GO:0006468
Vvi9g1347 249 Pfam PAN-like domain 136 177 IPR003609 -
Vvi9g1347 249 Pfam S-locus glycoprotein domain 11 63 IPR000858 GO:0048544
Vvi9g1347 249 SMART ntp_6 107 193 IPR003609 -
Vvi9g1347 249 ProSiteProfiles Protein kinase domain profile. 155 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1347 249 CDD PAN_AP_plant 136 191 - -
Vvi9g1347 249 SUPERFAMILY Protein kinase-like (PK-like) 198 249 IPR011009 -
Vvi9g1347 249 Gene3D Phosphorylase Kinase; domain 1 172 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1347 Vvi-Chr9 22214967 22216424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1347 189 249 Receptor kinase-like Gene Family AT4G11480 62.903 3.21e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi9g1347 PK_Tyr_Ser-Thr 1.9e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1347 - - vvi:100265866 140.969