Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1326 ATGGGCGCGCACGCAGCTCTACTTGTGCGCGCGCCAACCCCTTCGCCATTGCCCATTGCGCTTATACTAATCCTCGTATCGATCACTTCTTCTGAGGCCGTCTCCGACGCTGACATTCTCCTGAAGTTCCGGGTGTCTCTAGGCAATGCCACTGCCCTGGGCGACTGGAATACCTCCAGGAGTGTGTGCTCCACCGACCAGACCGAGAGTTGGAACGGTGTGCGCTGTTGGAATGGCAGCGTGTGGGGTCTGCGCCTGGAAGGCTTGGGGCTCAATGGTGCTATAGATTTGGATTCTTTGTCCTCCTTAAGGTATTTGAGGACTATAAGCTTTATGAACAATAGTTTTGAAGGTCCCTTGCCTGAAATCAAGAAACTAGTAGCGTTGAAGTCGGTTTATCTCTCCAACAACCATTTTTCTGGTGACATCCCAGATGATGCTTTCTCTGGTATGGCCTATCTGAAGAAAGTTCACTTGGCGAACAACAAGTTTACGGGGAAAATCCCTTCGTCGCTAGCCACTTTGCCTAGGCTTTTAGTCCTCAGGCTTGATGGGAACAAGTTTGAAGGCCAAATCCCAGACTTCCAACAAAAGCATTTGGCAAATGTGAACATATCCAACAACATGTTGGGGGGTCCAATCCCAGCTAGCCTGAGCAGGATCAGTTCTAGCTCGTTTTCGGGCAACAAAGATCTATGCGGGAAGCCTCTGGACTCATGCAGCTCCAAGAAGCCATCAGCAGTAATAGTGGCCTTAATTGTGGTAGCCATAGCGCTGATCCTAGTGACCATTGGCTTGCTACTGCTTGTCCTCCACCGCAACATCCGGACAGTCCAACTGGGGGGTGCTGCACCAGTGGACAACCACAGCATGTCGGAAGTTGCCCATAGCTCCCTAGTTGAATGTGGGACATCTGAGATGAGCGGGCACTCGAAGAGGGCTGAACAAGGGAAGTTGACATTTGTGAGGGACGACAGGGAGAGGTTTGATTTGCAGGATTTGTTAAGAGCCTCAGCAGAAGTGTTGGGAAGTGGCAACTTTGGGTCTTCTTACAAGGCTGTGCTCCTCAGTGGTGAAGCCATGGTGGCAAAGAGGTACAAGCAAATGAACAATGTGGGGAGAGAGGAGTTTCAAGAGCATATGAGAAGGCTAGGGAGGTTGGCACATCCAAACTTGCTTCCCCTTGTGGCTTATTACTACAGAAAAGAAGAGAAGCTCTTGGTTTCTGAGTATGTTGAGAATGGTAGCTTGGCTAGTCACCTCCATGGCAATCATTCCATAGATCAACCGGGGCTCAACTGGCCAACACGCTTGAGAATCATCAAGGGAGTAGCTAAGGGCTTGGCTTACCTCTACAATGAGCTCCCCAGCCTAATTGTAGCCCATGGACACCTGAAATCCTCCAATGTTCTCCTAGATGAATCGTTCAACCCTGTTTTGACAGACTACGCCCTACTTCCAGTGATCAACCCCGAGCACGCCAGGCAGCTCATGGTAGCCTACAAGTCACCAGAGTTCGCGCAACATAGCCGCACAACAAAGAAGACCGATGTGTGGGGCCTTGGAATACTAATCCTAGAAATCCTAACAGGAAAGTTCCCAACAAACTACCTCACAGTAGGTAACAACAGCGAAGAAGGCATCACTTGGGTTAACTCCATAGCGAATCAGGAGTGGATGATGGAAGTGTTCGACAAAGAAATGGGAGGAACGGAGAACAGCAAAGGTGAAATGCTGAAGCTTCTGAAGATTGGGTTGGCATGTTGTGAGGAGGATGTGGAGAGAAGGTGGGACTTGAAGGAGGCCATCAAGCATATTGAAGAGCTAGAAGTAACAGACGGTACTAATGATGAAGGAGATGAGTTTCCGTCCATAGCTATGACTGAAGATATGAGCACTATTACACTCTGA 1911 0.494 MGAHAALLVRAPTPSPLPIALILILVSITSSEAVSDADILLKFRVSLGNATALGDWNTSRSVCSTDQTESWNGVRCWNGSVWGLRLEGLGLNGAIDLDSLSSLRYLRTISFMNNSFEGPLPEIKKLVALKSVYLSNNHFSGDIPDDAFSGMAYLKKVHLANNKFTGKIPSSLATLPRLLVLRLDGNKFEGQIPDFQQKHLANVNISNNMLGGPIPASLSRISSSSFSGNKDLCGKPLDSCSSKKPSAVIVALIVVAIALILVTIGLLLLVLHRNIRTVQLGGAAPVDNHSMSEVAHSSLVECGTSEMSGHSKRAEQGKLTFVRDDRERFDLQDLLRASAEVLGSGNFGSSYKAVLLSGEAMVAKRYKQMNNVGREEFQEHMRRLGRLAHPNLLPLVAYYYRKEEKLLVSEYVENGSLASHLHGNHSIDQPGLNWPTRLRIIKGVAKGLAYLYNELPSLIVAHGHLKSSNVLLDESFNPVLTDYALLPVINPEHARQLMVAYKSPEFAQHSRTTKKTDVWGLGILILEILTGKFPTNYLTVGNNSEEGITWVNSIANQEWMMEVFDKEMGGTENSKGEMLKLLKIGLACCEEDVERRWDLKEAIKHIEELEVTDGTNDEGDEFPSIAMTEDMSTITL* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1326 636 Gene3D Ribonuclease Inhibitor 35 147 IPR032675 -
Vvi9g1326 636 Gene3D Transferase(Phosphotransferase) domain 1 412 626 - -
Vvi9g1326 636 ProSiteProfiles Protein kinase domain profile. 336 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1326 636 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 613 IPR046959 -
Vvi9g1326 636 Pfam Leucine rich repeat N-terminal domain 35 77 IPR013210 -
Vvi9g1326 636 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515
Vvi9g1326 636 SUPERFAMILY L domain-like 63 235 - -
Vvi9g1326 636 Pfam Protein kinase domain 339 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1326 636 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 97 192 - -
Vvi9g1326 636 FunFam pollen receptor-like kinase 1 305 411 - -
Vvi9g1326 636 FunFam Pollen receptor-like kinase 1 412 620 - -
Vvi9g1326 636 SUPERFAMILY Protein kinase-like (PK-like) 340 610 IPR011009 -
Vvi9g1326 636 Gene3D Phosphorylase Kinase; domain 1 302 411 - -
Vvi9g1326 636 MobiDBLite consensus disorder prediction 614 636 - -
Vvi9g1326 636 Gene3D Ribonuclease Inhibitor 148 244 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1326 Vvi-Chr9 21916644 21918841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1326 17 618 Receptor kinase-like Gene Family AT5G35390 53.312 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi9g1326 Pkinase 6.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1326 - - vvi:100261499 1174.84