Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1325 ATGTGGAATCCAAAGGGACATATAGAGAAGCAAGGAGGAAGAGGCATAGTTGCAGTGGCCATAGACAGGGATAAAGGGAGCCAACATGCTTTGAGATGGGCTACTGAGCGTCTTCTCACCAAGGGCCAAACTGTAGTTCTCATCCATGTCCTAAAAATATCGCCTACAAGTATAGAACATCATCCTGTGAGTTCTCACAAAGAAAAGATGAATGTAAAGGATCTGTTTGTCACCTTCCATTGCTTTTGTAGACGTAAAGATATACATTGTCTAGATATTTTACTTGAAGATACGGATATACCAAGAGCATTAATAGAATTCACTAATCATGCTGCAGTCGATAACTTGATTCTTGGTGCTTCATCAAAGTACAGTTTCATCAGAAGATTCAAGATCTCAGATGTTCCAGGCAGTGTATCCAAAGGAGCAGCAGATTTCTGCACCGTGTACGTCATCTCAAAAGGAAAGATATCTTCTGTGAGAAATGCTTCTCGTACAGCCCCTCACGTTTCCCCTCTTCATAGCCATATCCAGAACAAAGTTAACAACAATGCTATTGCTAATCCCGTTGAAGCACCATCAAGTCATAGTATTAGCATAAGAGCGGAAAAGATATCAAGCAAGCCTCATAGCATACAAGACGACAGGGAATCGTTCAAGTCACCATTTTTAAGAGGAGGAAGAGCTTCAAATGCAAAGCTGGGCTCTGAGCCATTAGAATTAGATACAGACATATCATTTATTAGCTCTGAGCGACCAAGTAGCGACCGCATGTCCAATGTTGTCTATGAGTATATGGATTCAGGTCCAACCCCTCGGATCTCATCTAGCTCAGACCATAGCTTTGGATCAATTCGCATAGGACCCGCATTTGGTGATCCCAACTCACTTAATTTCTCATCAATTTCACAGGAGAGCGGAAGGACCTCATGTTCATCAACGAGCATGATAAATGAAGAGGTGGAAGCTGAGATGAGAAGGCTGAAGCTAGAGCTGAAGCAAACAATGGACATGTATAGTACAGCTTGCAAGGAAGCACTGTCAGCAAAACAGAAGGCAGTGGAGCTGCAACGCTGGAGGATGGAAGAAGAGCGGAGATTAGAAGAGGCACGATTGGCTGAGGAAGCTGCCATGGCAATTGTAGAGAAGGAAAAAGCTAAGTGCCGAGCAGCCATAGATGCAGCTGAAGCATCTCAGAGGCTTGCAGAACTGGAATCACAAAGGAGAGTAAATGCAGAAATGAAAGCGCTCAAAGAGGCAGAGGACATGAAGAAGGTAATTAACAATCTAGCCCAAAATGATATCAGGTACAGGAAATACACGATTGAAGAGATTGAAGAAGCAACAGAGTTTTTTTCTGAATCTCGAAAGATTGGGGAAGGGGGTTATGGCCGTGTCTATAAGTGTTATCTTGATCATACACCGGTAGCAGTTAAGGTTTTGCGTCCAGATGCCTCCCAAGGAAGGTCACAGTTTCAGAAAGAGGTTGAAATATTGAGTTGCATAAGGCATCCTAATATGGTACTCCTCCTCGGAGCCTGCCCAGAGTATGGCTGTCTGGTCTACGAATGCATGGCTAAAGGAAGTTTAGATGACCGTCTATTTCAGCTGGGTAACACCCCACCTCTCTCTTGGCAACTCAGGTTTCGAATCTCTGCAGAGATTGCCACTGGCCTGCTTTTTCTCCACCAGACCAAGCCAGAGCCACTAGTGCACCGTGACCTCAAGCCTGGCAACATTTTGCTAGACTACAACTATGTCAGTAAGATTAGCGATGTAGGATTGGCAAGGCTTGTACCCCGTTCTGTCGCTGAAAATGAAATGAGGTGTCACATGACATCAACAGCTGGAACCTTCTGCTATATTGATCCTGAGTATCAACATACAGGAGTGCTCGATGTAAAATCTGATGTCTATTCCTTTGGAATCATGCTTCTACAAGTGATAACAGCCAAGCCACCAATGGGCTTGACTCACCAAGTTGAGCAGGCCATTGAGAACGGAACATTCAAGGAGATATTGGACCCGGCAGTGCCTGATTGGCCAGTTGAAGAAGCCTTGAGCTTTGCAAAGATGGCACTTCAATGTGCAGAGCTAAGGCGGAAAGACAGACCAGATCTGGGTAAGGTTATCTTGCCAGAGCTTAACAGATTGAGGGAACTTGCCGAAGAAAACATGAACCAAACAATGTGGGACAGAATGGCAGACCCTTCCGGGCCTTCCCCTATTCACAGCCAAGTTTCCATGGCACAGGATGTGATTAGCAACCCTCATCTAGAGCATTCAGGATACAGCTCTAAGAGCCACTCAAGCACACCATCAATGACAGGAAGACAATAA 2340 0.4479 MWNPKGHIEKQGGRGIVAVAIDRDKGSQHALRWATERLLTKGQTVVLIHVLKISPTSIEHHPVSSHKEKMNVKDLFVTFHCFCRRKDIHCLDILLEDTDIPRALIEFTNHAAVDNLILGASSKYSFIRRFKISDVPGSVSKGAADFCTVYVISKGKISSVRNASRTAPHVSPLHSHIQNKVNNNAIANPVEAPSSHSISIRAEKISSKPHSIQDDRESFKSPFLRGGRASNAKLGSEPLELDTDISFISSERPSSDRMSNVVYEYMDSGPTPRISSSSDHSFGSIRIGPAFGDPNSLNFSSISQESGRTSCSSTSMINEEVEAEMRRLKLELKQTMDMYSTACKEALSAKQKAVELQRWRMEEERRLEEARLAEEAAMAIVEKEKAKCRAAIDAAEASQRLAELESQRRVNAEMKALKEAEDMKKVINNLAQNDIRYRKYTIEEIEEATEFFSESRKIGEGGYGRVYKCYLDHTPVAVKVLRPDASQGRSQFQKEVEILSCIRHPNMVLLLGACPEYGCLVYECMAKGSLDDRLFQLGNTPPLSWQLRFRISAEIATGLLFLHQTKPEPLVHRDLKPGNILLDYNYVSKISDVGLARLVPRSVAENEMRCHMTSTAGTFCYIDPEYQHTGVLDVKSDVYSFGIMLLQVITAKPPMGLTHQVEQAIENGTFKEILDPAVPDWPVEEALSFAKMALQCAELRRKDRPDLGKVILPELNRLRELAEENMNQTMWDRMADPSGPSPIHSQVSMAQDVISNPHLEHSGYSSKSHSSTPSMTGRQ* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1325 779 Coils Coil 378 398 - -
Vvi9g1325 779 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 150 - -
Vvi9g1325 779 Pfam Protein tyrosine and serine/threonine kinase 455 710 IPR001245 GO:0004672|GO:0006468
Vvi9g1325 779 Gene3D HUPs 16 152 IPR014729 -
Vvi9g1325 779 SMART serkin_6 452 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1325 779 PANTHER OS02G0152300 PROTEIN 17 752 - -
Vvi9g1325 779 Gene3D Transferase(Phosphotransferase) domain 1 525 736 - -
Vvi9g1325 779 CDD STK_N 16 155 - -
Vvi9g1325 779 ProSiteProfiles Protein kinase domain profile. 452 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g1325 779 SUPERFAMILY Protein kinase-like (PK-like) 435 710 IPR011009 -
Vvi9g1325 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Vvi9g1325 779 ProSitePatterns Protein kinases ATP-binding region signature. 458 479 IPR017441 GO:0005524
Vvi9g1325 779 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 424 524 - -
Vvi9g1325 779 Coils Coil 318 338 - -
Vvi9g1325 779 Pfam Universal stress protein family 17 135 IPR006016 -
Vvi9g1325 779 Gene3D Phosphorylase Kinase; domain 1 430 524 - -
Vvi9g1325 779 FunFam U-box domain-containing protein 51 525 725 - -
Vvi9g1325 779 MobiDBLite consensus disorder prediction 754 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1325 Vvi-Chr9 21902965 21913202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1325 1 751 Receptor kinase-like Gene Family AT1G78940 60.864 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vvi9g1325 PK_Tyr_Ser-Thr 2.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1325 - - vvi:100266704 1447.95