Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1308 ATGTTAACCCTCCAAAATAAGCACACAGCAGCAAAACTTGTATCTGCAGCTGCCTCTCTAGCTGCCGTGGCTATTCTAATTCGAAAAATCACCAAGAACTTCATGCCCAGTGAAGTCCATGGATGCTTCTCCTCATCACAACTTACCATCATCATAGAAGAATTCCAAGCTGGGGTTGCTGTAAATAAATTGTTTGAAGCTGCTGATATCTACTTGGGCGCAGACATGGCTGGTTCAGTTCGAAAAGTTAAGGTACTAAAGGACAGGAAGGAGAAGAAGATGGAGGTCACCATGGACAGGAACGAGGAGATGACTGATGTTTTTGAGAACATCCGAGTGAAGTGGACATTGGTCTGTAAAGAGGCCAAAAACCCTAATGGGAATCTTGACTTACAATCAGAAGAGAGATCATATGAGCTGAGTTTCAGCAAGGAGCACAAGGGCCTGGTGCTGAACTCCTACCTGCCATACATTCTAGAAAGATCAAAGGCTATCAAGGAAGGGAACAAAGCACTGAAGCTTCATACAGTGATGAGCAGAAGCTGGCAGGCGGATGCAATCAATATCGATCACCCCATGACCTTCCAGACTCTGGCCATGGATTCAGAGCTGAAGAAGGCGCTGGTGGATGACCTGGACAACTTCATCAATGGGAAAGACTACTACAGAAGAATTGGGAAAGCTTGGAAGAGAGGGTACCTGGTGTATGGGCCTCCAGGGACGGGGAAATCAAGCTTGATTGCAGCCATGGCGAATCACCTGAAGTATGATATCTATGACTTGGACCTCAGAGCCATATACAACAACTCAGATCTCAAGCTGTTGCTGCTTGCCATGTCCAGTAGATCAATACTTGTCATGGAGCATGTTGACTGCATGTTCAATATTCTGCAGAGCCAAGAAGAAGATTGCTCGTGGGCGCCTCGGAAAAATCAGGTAACGCTTTCGGGTTTGCTGAACTTCATAGACGGTGTATGGTCATTCTGTGGCGACCAGGGACGGATCATCATCATCACCACGAATCACAGAGACAAGCTTGATCCGGCTCTGCTGAGGCCCGGCCGTATGGATATGCATATCCACATGTCATACTGCACCGTTTCCGCATTCAAGCAGCTTGCCTTCAACTGCCTTGGGGTTAGGCACCATCCTCTCTTTCAACAAATTGAAGGGCTGATCAGTAAGGTTGAGGTGACTCCGGCAGAAGTCTCGGGCGAGCTGATGAAAAGCAAAGATCCCGGTACCTCCCTCCAAGGCCTGATCAACTTCCTCTGCAACAAAATCAAGGAAGATGGAGGAGAAGCTGCAGATGACGTGGAGGTCGATTTCGAGACAAGTGGAGTCAGATCGTATGAGCTAAGTTTTAACAAAAAGCACAAAGACAAGGTCTTGAATTCATACTTTCCGTATATTTTAGAGCGAGCGAAGGCCATTAAAGAGGAAAGCAAGGTGGTGAAGCTCCACGCTGTGAATACGCACCATGGTTGTTGGCGAGACGCGATCATTCTCGATCACCCAATGACTTTCCAGACCCTTGCGATGGATTCTGAGCTTAAGATGGCTTTACTGGAGGACCTAGACAACTTTGTGAAGGGGAAAGCATTCTACAAAAGAATGGGGAAAACTTGGAGACGCGGGTACTTGTTGTATGGCCCTTCAGGGACAGGAAAGTCGAGCTTGATTGCAGCCATGGCTAATCACCTGAACTACGACATCTATGACATGGATCTCACTGGTGTAAGATCCAACGACGATCTCCGGCTTTTGTTGCTAGCCATGCCCAGTAAAGCAATTCTAGTCATCGAGGATGTTGACTGTGATGAAGTTGAAGCCGAGAATCAGGTAACACTCTCCGGCTTTCTCAACCTCATCAATGGCCTTCTGTCATGCTGCAGTGAAGAACAAATCCTCGTGTTCACTACCAATCACAGAGAACAGCTTGACCCTGCTTTGCTGAGGCCCGGGTGCATAGATATGGAGATTCACATGTCATACTGCACCATGTCTGCATTCAAGCAACTCGCCTGGAACTATCTAGGGCTTTATGATCATCCACTCTTTGAACAAATTGAAAGGCTAATGGGAGAGGTGAAGGTCACACCTGCAGAAGTTGCAGGGGAGTTGATGAAGAGCAAAGATGCTGGAGTTTCCCTGCAAGGCGTCATCGAGTTCTTCCACAAGAAGATTGAACAAAATGAAGCAAAAGCAGCCAAAGATAATGGAAGCACAAAAGGATTAGAAAATATATAA 2250 0.4684 MLTLQNKHTAAKLVSAAASLAAVAILIRKITKNFMPSEVHGCFSSSQLTIIIEEFQAGVAVNKLFEAADIYLGADMAGSVRKVKVLKDRKEKKMEVTMDRNEEMTDVFENIRVKWTLVCKEAKNPNGNLDLQSEERSYELSFSKEHKGLVLNSYLPYILERSKAIKEGNKALKLHTVMSRSWQADAINIDHPMTFQTLAMDSELKKALVDDLDNFINGKDYYRRIGKAWKRGYLVYGPPGTGKSSLIAAMANHLKYDIYDLDLRAIYNNSDLKLLLLAMSSRSILVMEHVDCMFNILQSQEEDCSWAPRKNQVTLSGLLNFIDGVWSFCGDQGRIIIITTNHRDKLDPALLRPGRMDMHIHMSYCTVSAFKQLAFNCLGVRHHPLFQQIEGLISKVEVTPAEVSGELMKSKDPGTSLQGLINFLCNKIKEDGGEAADDVEVDFETSGVRSYELSFNKKHKDKVLNSYFPYILERAKAIKEESKVVKLHAVNTHHGCWRDAIILDHPMTFQTLAMDSELKMALLEDLDNFVKGKAFYKRMGKTWRRGYLLYGPSGTGKSSLIAAMANHLNYDIYDMDLTGVRSNDDLRLLLLAMPSKAILVIEDVDCDEVEAENQVTLSGFLNLINGLLSCCSEEQILVFTTNHREQLDPALLRPGCIDMEIHMSYCTMSAFKQLAWNYLGLYDHPLFEQIERLMGEVKVTPAEVAGELMKSKDAGVSLQGVIEFFHKKIEQNEAKAAKDNGSTKGLENI* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1308 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 714 IPR027417 -
Vvi9g1308 749 Pfam ATPase family associated with various cellular activities (AAA) 548 664 IPR003959 GO:0005524|GO:0016887
Vvi9g1308 749 Pfam ATPase family associated with various cellular activities (AAA) 234 363 IPR003959 GO:0005524|GO:0016887
Vvi9g1308 749 CDD RecA-like_BCS1 208 362 - -
Vvi9g1308 749 Gene3D - 361 430 - -
Vvi9g1308 749 Gene3D - 662 732 - -
Vvi9g1308 749 Pfam Domain associated at C-terminal with AAA 42 119 IPR025753 -
Vvi9g1308 749 ProSitePatterns AAA-protein family signature. 334 352 IPR003960 GO:0005524|GO:0016887
Vvi9g1308 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 408 IPR027417 -
Vvi9g1308 749 Gene3D - 501 661 IPR027417 -
Vvi9g1308 749 Gene3D - 183 360 IPR027417 -
Vvi9g1308 749 SMART AAA_5 543 667 IPR003593 GO:0016887
Vvi9g1308 749 SMART AAA_5 229 366 IPR003593 GO:0016887
Vvi9g1308 749 PANTHER BCS1 AAA-TYPE ATPASE 15 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1308 Vvi-Chr9 21779346 21783885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1308 521 663 Calmodulin-binding Proteins AT3G56690 26.415 2.15e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1308 K08900 - vvi:100241090 845.884