Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1293 ATGGTTATGCGGTCAAAGAAGATTCTCCGGCTATGGCTATGGTGGGCGCCGCAGCTGCGGCGTAGGTCTCCGGCATTGCCATTGAACAAGGAGGGTTTTCAAGTTCATTCGACCGAGACCTTGAGGGGGTCATTGCTGGCCAGCCAGTACTTGTGTCAATGGAATCTAAAGGAGGTCCCCAGAGGGTTCTTGGCCGTGTACGTCGGGCCGGAGCTAAGGCGGTTTGTAATCCCTACCAGCTACTTGTCCATGCCTGACTTTAGGGCTTTGATGGAGCGAATGGCAGATGAATTTGGGTTCGAGCAAGAAGGTGGACTGCAAATTCCTTGTGAGGAGGAAGATTTTGAGGAGATACTGGGGAAGTGTCTGACAAGGCATAAAATGAAGAAACATAAAGGAGTAGTACAAAATTGA 414 0.5024 MVMRSKKILRLWLWWAPQLRRRSPALPLNKEGFQVHSTETLRGSLLASQYLCQWNLKEVPRGFLAVYVGPELRRFVIPTSYLSMPDFRALMERMADEFGFEQEGGLQIPCEEEDFEEILGKCLTRHKMKKHKGVVQN* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1293 137 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 47 118 IPR003676 GO:0009733
Vvi9g1293 137 Pfam Auxin responsive protein 55 119 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1293 Vvi-Chr9 21569331 21569744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1293 2 126 Calmodulin-binding Proteins AT5G20810 40.602 7.45e-24 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1293 K14488 - vvi:100247885 286.189