Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1287 ATGGCAACCTCCGTTAACATCAATCAAATTGTAAGGCTGAAACAGGTGATGAAGAGGTGGAAGACAATGAGCATGAAGCTCAGACATGCACCCTCTCCAGATGCCACTGACAGTGAGACTGACACCGATATTGAGGCTTGTAAGCCCCGCACTCCCTCAGGCTTCCTTGCCATCTACGTTGGATCGGAGCGGGAAAGGTTCTTGATACCAACTAGGTATGTGAATCTTCCAGTGTTTGTCACCCTCTTGAAGAGAGCAGAGGAGGAGTATGGATTCAAGTTCAGTGGAGGGATAGTGGTGCCTTGTGAAGTAGGGTTCTTTAGGAAAGTGTTGGAGTTTCTTGAGAAAGATGAGAAGAAGTTTGGGAGCTTGGAGCTGGATGAGTTCTTGAAGATATTTTCTGAAGTGGGTTTTGATTCTTCATGCAAGGCAAGTAGCTACAACATTAATACTTGTCATGATCAGTTCACACATCTGATGCACAAGGCCAGCTAG 495 0.4586 MATSVNINQIVRLKQVMKRWKTMSMKLRHAPSPDATDSETDTDIEACKPRTPSGFLAIYVGSERERFLIPTRYVNLPVFVTLLKRAEEEYGFKFSGGIVVPCEVGFFRKVLEFLEKDEKKFGSLELDEFLKIFSEVGFDSSCKASSYNINTCHDQFTHLMHKAS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1287 164 Pfam Auxin responsive protein 12 114 IPR003676 GO:0009733
Vvi9g1287 164 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 110 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1287 Vvi-Chr9 21487106 21487600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1287 2 125 Calmodulin-binding Proteins AT3G43120 35.374 6.31e-24 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1287 K14488 - vvi:100855086 333.954