Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1274 ATGAAGGGTAGGGTTTGTGAGTTGTGTAATGAAGAAGCTTCTCTGTACTGCGGTTCAGATTCGGCGTTTCTCTGCTGGAGCTGTGACGCAAGGGTTCACGGTGCCAATTTTCTGGTGGCTCGCCACGTCCGCCACACTCTGTGCTCAGAATGCAACGGTTTGGCAGGGGACACGTTCTTCGGCGTCGGGTTTCAGCCGCACCGGCTGATCTGTAGATCCTGCTCGTCAGAGGTGGAGTCGGAGACCTCCACCGATCACGACTCCAAGTCTTCATCGTCGCCTTGCGTTTCCACCACCGAGTCCGCTCCGAGGAAGGGCGGCGTCTCGCGGCGGAAGGCGGAGAGGACCGGCTTCACGAGCTCAGTGTCTGCGGTCTCCGGCGTGGACTCGAGGTTTCCGTCGAAACTCCGGGCACGGTCGAGCGTGGACGCGAAGGCGGAGGACATTTTAGTAAATTGGTGCAGAAAGCTGGGGCTAAATGGTAGTTGCACATCCGTGGCTTCTCACGCGCTCGGTGTGTGTTTAGTCAAATTGACCGTTCTGCCTCTACGCGTCTCGCTCGTGGCGGCGATTTCGTGCGCCGCGAAGCTAAGCGGGGACAGGTCGGCATACACGCCTCAGAATCTGAAGAGGCTTGTGGAGATCAGCGGAGTGCCGGCGAAGCTGATCTTGGCAGCCGAGTCAAAGCTCGCACGTGTGCTGAAGATGGAGAGACGGAGACCACGGCACGTGCGCGATCGAGAGGAAGGCTGGGCAGAGTGCTCTGGGGAAGAATTTAGATGA 783 0.5875 MKGRVCELCNEEASLYCGSDSAFLCWSCDARVHGANFLVARHVRHTLCSECNGLAGDTFFGVGFQPHRLICRSCSSEVESETSTDHDSKSSSSPCVSTTESAPRKGGVSRRKAERTGFTSSVSAVSGVDSRFPSKLRARSSVDAKAEDILVNWCRKLGLNGSCTSVASHALGVCLVKLTVLPLRVSLVAAISCAAKLSGDRSAYTPQNLKRLVEISGVPAKLILAAESKLARVLKMERRRPRHVRDREEGWAECSGEEFR* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1274 260 CDD Bbox1_BBX-like 5 47 - -
Vvi9g1274 260 MobiDBLite consensus disorder prediction 81 115 - -
Vvi9g1274 260 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 100 - -
Vvi9g1274 260 MobiDBLite consensus disorder prediction 87 104 - -
Vvi9g1274 260 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270
Vvi9g1274 260 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi9g1274 260 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1274 Vvi-Chr9 21166877 21167659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1274 6 253 C2C2-CO-like Transcription Factor Family AT3G21150 36.508 7.19e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi9g1274 zf-B_box 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1274 - - vvi:100241102 471.085