LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi9g1265	ATGGATGGAATCCATGGAAACAATGCGGGAATCCACAGACCAGATGGTCAGCATCACCCTATCCATGTGCAGCATTACATGCAAGAGCATGATCATGGGATGCACCATATGAGCAATGGTGGTTCTATGGATGAAGATCATGATGAGGGCGGTAGCGGTGAGGGCATGGAAGGGGATGTGCAGGCTGATCCTGGAAATCTTGCTGATAGTCGGGGTGCACTTACTGTTCAGCCCGGTGGCAGCGATAATCAGAATCAGCTCACTCTCTCTTTCCAGGGTCAGGTTTATGTATTTGACTCTGTGTCACCGGAAAAGGTCCAAGCTGTTCTTCTGTTATTGGGTGGCCGTGAAGTACCTCCAACCATGCCTGCTTTGTCAATAGCCGGTCATAATAGGGAACTACCTGGTACTCCACAACGGTACAATGTCCCTCATAGATTGGCCTCACTGATTAGATTCCGAGAAAAGCGTAAAGAACGTAATTTTGACAAGAAAATTCGCTATACGGTCCGTAAAGAGGTAGCACTTAGGATGCAACGGAATAAAGGTCAATTTACATCTTCAAAGTCCAATCATGATGATTCTGCATCAACGACACCAGGCTGGGAGTCAAGCTGGGGTATGGCTGGCAATGGACCCATAAATCAAGAGATTGTGTGTCGCCACTGTGGCATCAGTGAGAAATCTACTCCAATGATGCGTCGTGGACCGGAAGGGCCAAGGACACTTTGCAATGCATGTGGACTTATGTGGGCAAACAAGGGTACCCTCAGGGACCTCTCAAAGGCAGCACCAGAGGCTGGACAAAGTCCTTCCTTGAACCAGACTGGAGAAAACGGAAATTTTGAGACAGATCAAATGGTTCTTGGAATGGCAGAAAATGTTAGTGATCAAGCGTGA	900	0.4778	MDGIHGNNAGIHRPDGQHHPIHVQHYMQEHDHGMHHMSNGGSMDEDHDEGGSGEGMEGDVQADPGNLADSRGALTVQPGGSDNQNQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPTMPALSIAGHNRELPGTPQRYNVPHRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDDSASTTPGWESSWGMAGNGPINQEIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPEAGQSPSLNQTGENGNFETDQMVLGMAENVSDQA*	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi9g1265	299	Pfam	GATA zinc finger	220	256	IPR000679	GO:0006355\|GO:0043565
	Vvi9g1265	299	CDD	ZnF_GATA	219	274	IPR000679	GO:0006355\|GO:0043565
	Vvi9g1265	299	ProSiteProfiles	CCT domain profile.	146	188	IPR010402	GO:0005515
	Vvi9g1265	299	MobiDBLite	consensus disorder prediction	179	208	-	-
	Vvi9g1265	299	ProSiteProfiles	Tify domain profile.	80	115	IPR010399	-
	Vvi9g1265	299	PANTHER	GATA TRANSCRIPTION FACTOR 28	16	281	IPR045280	GO:0006355
	Vvi9g1265	299	Pfam	CCT motif	146	188	IPR010402	GO:0005515
	Vvi9g1265	299	MobiDBLite	consensus disorder prediction	180	208	-	-
	Vvi9g1265	299	ProSiteProfiles	GATA-type zinc finger domain profile.	214	262	IPR000679	GO:0006355\|GO:0043565
	Vvi9g1265	299	Gene3D	-	213	270	IPR013088	GO:0006355\|GO:0008270
	Vvi9g1265	299	SMART	tify_2	80	115	IPR010399	-
	Vvi9g1265	299	MobiDBLite	consensus disorder prediction	32	81	-	-
	Vvi9g1265	299	MobiDBLite	consensus disorder prediction	32	49	-	-
	Vvi9g1265	299	SMART	GATA_3	214	267	IPR000679	GO:0006355\|GO:0043565
	Vvi9g1265	299	ProSitePatterns	GATA-type zinc finger domain.	220	247	IPR000679	GO:0006355\|GO:0043565
	Vvi9g1265	299	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	216	265	-	-
	Vvi9g1265	299	MobiDBLite	consensus disorder prediction	261	281	-	-
	Vvi9g1265	299	Pfam	tify domain	82	114	IPR010399	-
	Vvi9g1265	299	MobiDBLite	consensus disorder prediction	267	281	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi9g1265	Vvi-Chr9	20974168	20988907	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi9g1265	1	297	Tify Gene Family	AT1G51600	59.416	1.24e-118	341

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Vvi9g1265		CCT	8.5e-15	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi9g1265	-		-	vvi:100251358	597.045