Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1234 ATGCAGCAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGTGTTTGAGACAGGTTAGATGTCAAACCATTGCATCTGGAAATGAGAAATATATGGCTGTTATAAATCTAATACCATGCTTTGTGCTTGACAGCGTTAAGTTTCTTCTCATATCTTATATAGATATTCCTCTTCAAAGGATATAG 294 0.381 MQQMEPTQLKHEAKLKGGFYVDPEVKLLFIIRIRGINAMHPKTRKILQLLCLRQVRCQTIASGNEKYMAVINLIPCFVLDSVKFLLISYIDIPLQRI* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1234 97 PANTHER 60S RIBOSOMAL PROTEIN L7 2 77 IPR039699 -
Vvi9g1234 97 FunFam Uncharacterized protein 27 79 - -
Vvi9g1234 97 Gene3D - 27 80 IPR036919 -
Vvi9g1234 97 Pfam Ribosomal protein L30p/L7e 28 60 IPR016082 -
Vvi9g1234 97 SUPERFAMILY Ribosomal protein L30p/L7e 27 85 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1234 Vvi-Chr9 20391320 20391704 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1234 2 97 Cytoplasmic Ribosomal Protein Gene Family AT2G01250 50.962 2.67e-23 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1234 K02937 - vvi:100250265 102.064