Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1231 ATGCAGCAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGTGTTTGAGACAGATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGGTACCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCATTTAAACTGAAGGCACCATTGGGTGGTTTGGAGAAGAAGAGGAATCACTACGTTGAAGGAGGAGATGCTGGAAACTGTGAAAATTACATCAATGAGCTCATTAGAAGAATGAACTAG 561 0.4189 MQQMEPTQLKHEAKLKGGFYVDPEVKLLFIIRIRGINAMHPKTRKILQLLCLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIVEQALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNCENYINELIRRMN* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1231 186 PANTHER 60S RIBOSOMAL PROTEIN L7 2 186 IPR039699 -
Vvi9g1231 186 FunFam 60S ribosomal protein L7 132 186 - -
Vvi9g1231 186 SUPERFAMILY Ribosomal protein L30p/L7e 27 186 IPR036919 -
Vvi9g1231 186 CDD Ribosomal_L7_archeal_euk 27 186 IPR035808 -
Vvi9g1231 186 Gene3D - 27 128 IPR036919 -
Vvi9g1231 186 Gene3D - 129 186 IPR036919 -
Vvi9g1231 186 Pfam Ribosomal protein L30p/L7e 28 78 IPR016082 -
Vvi9g1231 186 NCBIfam 60S ribosomal protein uL30 3 186 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vvi9g1231 186 ProSitePatterns Ribosomal protein L30 signature. 46 78 IPR018038 -
Vvi9g1231 186 FunFam 60S ribosomal protein L7 27 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1231 Vvi-Chr9 20340410 20342130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1231 2 186 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.946 3.55e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1231 K02937 - vvi:100250265 377.867