Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1229 ATGCAAGGCACTGATGAACTTCCAGGTCTAATGCCACTTACCATGTCAGCAGTTCTAACTATGTGTTGGAGCACAGCCAGCACTGCAGAGATGTCATATTATGAGGTCTATATGGACAGATGTCATGATCTGTTGGAAGTCAAAGCAAAGGAAATTGCAATATTGGATGACAAAGATGGGCAGATTCATCTAAAGGGCTTACCTCGTGTCCCAATAAGTTCCATGTCTGAATTTTATGAGGTCTTCTCTCGTGGAATTCAGCGCAGAAAAGTTGCACACACAGGGCTTAATGATGTCTCTAGCAGAAGCCATGGAGTCCTTGTGATATCTGTTTCCACTCCTTGTGATGATGGCTCCGATGCTGTTGTTACTTGGAAGTTGAACCTCATCGATTTAGCAGGTGATGAAGACAACAGAAGAACCTGCAATGAAGGGATACGTCTCCAAGAGAGTGCTAAGATCAACCAGTCCTTATTTGTCTTATCAAATGTGATTTATGCCCTTAACAATAACAAGCCCCGTGTACCATACAGAGCAAACAAACTGACCCGGATACTGCAAGATTCCCTTGGAGGAACCTGCCGTGCATTGATGGTTGCTTGTCTGAATCCAGGAGAGTACCAAGAATCTGTTCATACGGTCAGCTTGGCTGCACGGTCGCACCACATATCTAACTCTGTTCCATCAGCTCAAAAACAAGATACTCCAAATGTTAAAGTTGACATGGAGGCGAAATTGCGTGCCTGGCTTGAATCAAAAGGAAAGACAAAGAGTGCACAAAGAATGAGGGCATTTGGTTCACCTCTTATGAGCAAAGCTCCTAGTTCTTTGAGCTCTTTGAAGAAGCCCTGTCCATGTCACAGCTCCACAAAAGCAAAGGCTATTACAAACCAAGGTGCTTCCAATGCTAAAGAAAGGGTTCTTTCTGTGCAGCACAGAAATTTATTCTACAATGGAGATTCAGTTGATTCTGGCACAGAGCGTTTCAACTTTGCTGCTGAGAACAATACCAACAATACAGAAGAAGAGTTCAAGGCTGGTGGGGATGGGAGTGCCTCAGAAACAAATACAATTTTACCTGATGATGCATTGGCAAATGACAAGAAGATTCTGAAGCTGTATACTTGGAAGCTTCAGTTTTTAAGGCTCTGTTTCCTTTCATATACTGGGATCCATTACCTAGCATAG 1188 0.4327 MQGTDELPGLMPLTMSAVLTMCWSTASTAEMSYYEVYMDRCHDLLEVKAKEIAILDDKDGQIHLKGLPRVPISSMSEFYEVFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTPCDDGSDAVVTWKLNLIDLAGDEDNRRTCNEGIRLQESAKINQSLFVLSNVIYALNNNKPRVPYRANKLTRILQDSLGGTCRALMVACLNPGEYQESVHTVSLAARSHHISNSVPSAQKQDTPNVKVDMEAKLRAWLESKGKTKSAQRMRAFGSPLMSKAPSSLSSLKKPCPCHSSTKAKAITNQGASNAKERVLSVQHRNLFYNGDSVDSGTERFNFAAENNTNNTEEEFKAGGDGSASETNTILPDDALANDKKILKLYTWKLQFLRLCFLSYTGIHYLA* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1229 395 SMART kinesin_4 1 231 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi9g1229 395 PRINTS Kinesin heavy chain signature 94 111 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi9g1229 395 PRINTS Kinesin heavy chain signature 126 144 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi9g1229 395 PRINTS Kinesin heavy chain signature 175 196 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi9g1229 395 FunFam Uncharacterized protein 1 265 - -
Vvi9g1229 395 Gene3D Kinesin motor domain 1 265 IPR036961 -
Vvi9g1229 395 ProSiteProfiles Kinesin motor domain profile. 1 223 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi9g1229 395 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 4 251 IPR027640 GO:0003777|GO:0007018
Vvi9g1229 395 Pfam Kinesin motor domain 1 223 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi9g1229 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 253 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1229 Vvi-Chr9 20315978 20317165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1229 3 255 Calmodulin-binding Proteins AT5G65930 30.916 1.42e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1229 K10403 - vvi:104877678 673.315