Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1225 ATGGACATTGGCAAGAAGCAAGAGGTTGAGGCGAAAAAGAAGAAGAATGCTGAGAATCGGAAACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTATGAGGAGCAGCAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGGTACCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGGCTTTGGGGAAGTTTGGGATTATTTGCATGGAAGATCTTATTCATGAAATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGA 408 0.424 MDIGKKQEVEAKKKKNAENRKLIYSRAKQYAKEYEEQQKELIQLKHEAKLKGGFYVDPEVKLLFIIRIRGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIVEQALGKFGIICMEDLIHEIMTVGPHFKEANNFL* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1225 135 SUPERFAMILY Ribosomal protein L30p/L7e 69 134 IPR036919 -
Vvi9g1225 135 Coils Coil 24 51 - -
Vvi9g1225 135 PANTHER 60S RIBOSOMAL PROTEIN L7 3 70 IPR039699 -
Vvi9g1225 135 Pfam Ribosomal L30 N-terminal domain 5 58 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1225 Vvi-Chr9 20282124 20283988 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1225 3 135 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 62.011 1.66e-70 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1225 K02937 - vvi:104880426 216.853