Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1222 ATGGACATTGGCAAGAAGCAAGAGGTTGAGGCGAAAAAGAAGAAGAATGCTGAGAATGGGAAACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTATGAAGAGCAGCAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTATGTTGATCCAGAGGTTAAACTTCTATTTGTTATTCGTATCCGTGGTATCAATGCTATGCACCCGAAGATGAGAAAGATTTTGCAGCTCTTGCGCTTGAGACAGATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACAAGTTGCACAGGGTTGAGCCTTATGTGACTTATGGGTACCCCAATTTGAAGAGTGTGTGA 372 0.414 MDIGKKQEVEAKKKKNAENGKLIYSRAKQYAKEYEEQQKELIQLKHEAKLKGGFYVDPEVKLLFVIRIRGINAMHPKMRKILQLLRLRQIFNGVFLKVNKATMNKLHRVEPYVTYGYPNLKSV* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1222 123 FunFam 60S ribosomal protein L7 62 123 - -
Vvi9g1222 123 Coils Coil 24 51 - -
Vvi9g1222 123 Pfam Ribosomal L30 N-terminal domain 5 58 IPR012988 -
Vvi9g1222 123 Pfam Ribosomal protein L30p/L7e 63 113 IPR016082 -
Vvi9g1222 123 SUPERFAMILY Ribosomal protein L30p/L7e 62 123 IPR036919 -
Vvi9g1222 123 Gene3D - 62 123 IPR036919 -
Vvi9g1222 123 PANTHER 60S RIBOSOMAL PROTEIN L7 3 123 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1222 Vvi-Chr9 20237025 20238609 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1222 5 123 Cytoplasmic Ribosomal Protein Gene Family AT2G01250 82.353 9.87e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1222 K02937 - vvi:100264368 204.912