Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g1219 ATGGACATTGGCAAGAAGCAAGAGGTTGAGGCGAAAAAGAAGAAGAATGCTGAGAATGGGAAACTGATTTACAGTAGAGCTAAGCAGTATGCAAAGGAGTATGAGGAGCAGCAAAAGGAGCTGATGCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCTGTGGTATCAATGCTATGCACCTGAAGACGAGAAGGATTTTGCAGCTCTTGTGCTTGAGACAGATATTCAATGGGGTGTTTCTTAAAGTGAACGAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGGTACCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTACGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACTTCATTTTAAGGAGGCCAACAACTTCCTATGGCATTTAAACTGA 558 0.4194 MDIGKKQEVEAKKKKNAENGKLIYSRAKQYAKEYEEQQKELMQLKHEAKLKGGFYVDPEVKLLFIIRICGINAMHLKTRRILQLLCLRQIFNGVFLKVNEATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIVEQALGKFGIICMEDLIHEIMTVGLHFKEANNFLWHLN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g1219 185 Pfam Ribosomal L30 N-terminal domain 5 58 IPR012988 -
Vvi9g1219 185 Coils Coil 24 51 - -
Vvi9g1219 185 CDD Ribosomal_L7_archeal_euk 62 182 IPR035808 -
Vvi9g1219 185 ProSitePatterns Ribosomal protein L30 signature. 81 113 IPR018038 -
Vvi9g1219 185 PANTHER 60S RIBOSOMAL PROTEIN L7 3 183 IPR039699 -
Vvi9g1219 185 Pfam Ribosomal protein L30p/L7e 63 113 IPR016082 -
Vvi9g1219 185 SUPERFAMILY Ribosomal protein L30p/L7e 62 184 IPR036919 -
Vvi9g1219 185 Gene3D - 62 168 IPR036919 -
Vvi9g1219 185 FunFam 60S ribosomal protein L7 62 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g1219 Vvi-Chr9 20189000 20191050 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g1219 3 182 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 80.556 3.69e-105 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g1219 K02937 - vvi:100264368 308.531